Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_C01
(376 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0571 - 19602755-19603831 49 1e-06
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 40 6e-04
06_03_0810 - 24817268-24817350,24817547-24817697,24818441-248185... 30 0.68
05_04_0356 - 20584212-20584628,20584798-20584899,20585658-205857... 29 0.90
05_04_0423 - 21126038-21126556 28 2.1
03_02_0061 + 5342338-5342401,5343025-5343131,5343962-5344009,534... 27 4.8
03_02_0846 + 11712530-11712740,11713974-11714055,11714127-117142... 27 6.3
01_06_0472 - 29592383-29592457,29592720-29592840,29592971-295930... 27 6.3
>07_03_0571 - 19602755-19603831
Length = 358
Score = 48.8 bits (111), Expect = 1e-06
Identities = 21/49 (42%), Positives = 36/49 (73%)
Frame = +1
Query: 214 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ 360
+L+ + R+ SV+N QKIT++MK+V+AAK RA+ + ++RP+ E V+
Sbjct: 37 SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVE 85
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 39.9 bits (89), Expect = 6e-04
Identities = 17/27 (62%), Positives = 25/27 (92%)
Frame = +1
Query: 220 KAISIRLKSVKNIQKITQSMKMVSAAK 300
+A+ R+KSV+NIQKIT++MKMV+A+K
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASK 86
>06_03_0810 -
24817268-24817350,24817547-24817697,24818441-24818542,
24818722-24818802,24818900-24819020,24819284-24819401,
24819514-24819637,24819898-24819963,24820117-24820407,
24820455-24820592,24820967-24821116,24821240-24821410,
24821543-24821746,24821880-24822104,24822461-24822595,
24822995-24823096,24823586-24823882,24823979-24824167,
24824581-24824628,24824872-24825070,24825501-24825730,
24826373-24826568,24826695-24826882
Length = 1202
Score = 29.9 bits (64), Expect = 0.68
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 174 GGGGQPPAEQEYGHT*SHLHSSQVCKEYSED 266
G G + A ++ HT H+HS KEY ED
Sbjct: 246 GTGARSNAYTDFHHTVFHIHSPTKTKEYGED 276
>05_04_0356 -
20584212-20584628,20584798-20584899,20585658-20585705,
20586046-20586186,20586315-20586437,20587166-20587252,
20587630-20587742,20587844-20587943,20588217-20588601,
20588841-20588917,20589501-20589593,20589697-20589774,
20590923-20591246
Length = 695
Score = 29.5 bits (63), Expect = 0.90
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 181 PPPLGCIHPVRHDSTFSRLFFSTVEIVNLIYIISNNTN 68
P P G HP +D S F S +E + +Y+ N+++
Sbjct: 103 PGPSGATHPTENDCAQSNRFNSVIEKIERLYMGKNSSD 140
>05_04_0423 - 21126038-21126556
Length = 172
Score = 28.3 bits (60), Expect = 2.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 132 ENVESCRTGCMHPSGGGGQPPAE 200
E + CRT CM +G QPPA+
Sbjct: 105 EKLHQCRTPCMKVNGRWEQPPAD 127
>03_02_0061 +
5342338-5342401,5343025-5343131,5343962-5344009,
5344297-5344399,5345152-5345234,5345271-5346089,
5346189-5346338,5346420-5346797
Length = 583
Score = 27.1 bits (57), Expect = 4.8
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +1
Query: 130 VKMLSRVAPGVCTQAVAVVNHQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTR 309
++ LS + C A+ N N L A +RL +++Q T S+ SA Y R
Sbjct: 329 LQRLSHLEVFECRMLQAIENKAPNLCSFDLGARQVRLLLGESLQMKTLSLDYPSAVYYAR 388
Query: 310 AE 315
AE
Sbjct: 389 AE 390
>03_02_0846 +
11712530-11712740,11713974-11714055,11714127-11714226,
11714311-11714406,11714492-11714542,11714685-11714750,
11715413-11715514,11716099-11716167,11716251-11716334,
11716531-11716626,11717216-11717268,11718808-11718945,
11719003-11719435
Length = 526
Score = 26.6 bits (56), Expect = 6.3
Identities = 10/51 (19%), Positives = 27/51 (52%)
Frame = +1
Query: 190 HQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPY 342
+ ++ + TL+ S + ++ +QK+++ + + S Y RD+ ++ Y
Sbjct: 231 YNSDKMVGTLQVASTGIVALSYVQKVSEKVSLASDFMYNHMSRDVTSSFGY 281
>01_06_0472 -
29592383-29592457,29592720-29592840,29592971-29593056,
29593224-29593310,29593493-29593573,29593656-29593803,
29593987-29594054,29594145-29594402
Length = 307
Score = 26.6 bits (56), Expect = 6.3
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = -3
Query: 245 DLRRMEMALSVAIFLF---CWWLTTATAWVHTPGATRLNIFTALF*YSGN 105
++RR+ +AI F C+W + W T A I A F Y+G+
Sbjct: 229 EMRRILKPSGLAIMSFSNRCFWTKAISIWTSTSDADHAWIVGAYFHYAGD 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,911,324
Number of Sequences: 37544
Number of extensions: 229845
Number of successful extensions: 718
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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