Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_C01
         (376 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-5|AAO21417.1|  200|Caenorhabditis elegans Hypothetical ...    87   3e-18
AC084158-4|AAK68562.1|  299|Caenorhabditis elegans Hypothetical ...    87   3e-18
AC084158-3|AAL00872.1|  313|Caenorhabditis elegans Hypothetical ...    87   3e-18
AF067942-5|AAG45580.2|  345|Caenorhabditis elegans Hypothetical ...    27   3.3  
AF003150-3|AAB54214.1|  208|Caenorhabditis elegans Collagen prot...    27   4.4  
U97189-2|AAC48165.2|  336|Caenorhabditis elegans Serpentine rece...    26   7.6  

>AC084158-5|AAO21417.1|  200|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.18c protein.
          Length = 200

 Score = 87.4 bits (207), Expect = 3e-18
 Identities = 43/61 (70%), Positives = 50/61 (81%)
 Frame = +1

Query: 187 NHQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 366
           N +Q R  ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA  F+
Sbjct: 18  NAEQARGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFF 77

Query: 367 E 369
           +
Sbjct: 78  D 78


>AC084158-4|AAK68562.1|  299|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.18a protein.
          Length = 299

 Score = 87.4 bits (207), Expect = 3e-18
 Identities = 43/61 (70%), Positives = 50/61 (81%)
 Frame = +1

Query: 187 NHQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 366
           N +Q R  ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA  F+
Sbjct: 18  NAEQARGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFF 77

Query: 367 E 369
           +
Sbjct: 78  D 78


>AC084158-3|AAL00872.1|  313|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.18b protein.
          Length = 313

 Score = 87.4 bits (207), Expect = 3e-18
 Identities = 43/61 (70%), Positives = 50/61 (81%)
 Frame = +1

Query: 187 NHQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 366
           N +Q R  ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA  F+
Sbjct: 18  NAEQARGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFF 77

Query: 367 E 369
           +
Sbjct: 78  D 78


>AF067942-5|AAG45580.2|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.5 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 21  DIFRRLVYFN*KRLK-KLVLFEIIYIKFTISTVLKKSRENVESCRTGCMHPSGGGGQPPA 197
           D  ++  + N  R + +  L +  YIK T   VL  S++++   + G   P G    PP 
Sbjct: 156 DFMKKFSFVNLLRFEDQKNLMKEFYIKLT---VLINSKQSMSCGKEGMTFPDGSDVLPPT 212

Query: 198 EQEYG 212
             E+G
Sbjct: 213 SSEWG 217


>AF003150-3|AAB54214.1|  208|Caenorhabditis elegans Collagen protein
           55 protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 120 KKSRENVESCRTGC-MHPSGGGGQPPAEQEYGH 215
           ++++ N ES   GC   P G  GQP A+ E GH
Sbjct: 89  RQAQCNCESQSQGCPAGPPGPPGQPGAQGEQGH 121


>U97189-2|AAC48165.2|  336|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 15 protein.
          Length = 336

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 160 HPVRHDSTFSRLFFSTVEIVNLIYII 83
           HP+   S F  LF S   I+ LIY +
Sbjct: 17  HPIYRGSLFIHLFVSISSIIPLIYFV 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,950,154
Number of Sequences: 27780
Number of extensions: 183393
Number of successful extensions: 531
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)