Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_B23
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 30 0.32
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 2.3
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 26 4.0
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 26 5.3
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 7.0
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 7.0
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 25 7.0
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 9.2
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 25 9.2
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 25 9.2
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 29.9 bits (64), Expect = 0.32
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +1
Query: 256 VFVLDGGFSSQLSCHVGTTADGDPLWSARYLQTHPQEVINTHLDFLRAGADMIMTNTSQ 432
+ +LDGG S+ + + + LW++ L +P+ V+ H +FL+ D+I T T Q
Sbjct: 1 MLMLDGG-STAILPKLPESISESRLWTSEALVRYPEIVVKHHEEFLKV-CDIISTFTYQ 57
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 385 DFLRAGADMIMTNTSQA--SVNGFVKHLGLTPEAGYELIKSAVVLAKRARDIYVKECKDT 558
DF + +++ T+++Q S+ +H EA + +S+ + + D+ V E KD+
Sbjct: 631 DFNASMEELLNTHSNQLLISMTKITEHFQSLDEA-LQSARSSCAVPNSSLDLIVSELKDS 689
Query: 559 KNSHRNSL 582
KNS ++L
Sbjct: 690 KNSLLDAL 697
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Frame = +1
Query: 445 GFVK--HLGLTPEAGYELIK--SAVVLAKRARDIYVKECKD 555
G+VK H+G+ ++ +L+ SAV L+ R RD +K+C +
Sbjct: 141 GYVKEWHVGVRVKSSRKLVAFISAVPLSIRVRDKIIKKCAE 181
>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 5.3
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +1
Query: 469 TPEA-GYELIKSAVVLA----KRARDIYVKECKDTKNSHRNSLVVGSIGP 603
TPE Y L +VVL + RDI EC + S+R ++ G GP
Sbjct: 201 TPEGKDYMLASESVVLTQFGYRTFRDIRPGECVFIRRSNREDILAGFRGP 250
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -1
Query: 546 FFYIDIPGTLCKDNRTFYQF 487
+FYIDI G L D Y+F
Sbjct: 443 YFYIDIEGYLIPDEDAVYEF 462
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1
Query: 304 GTTADGDPLWS 336
GT A+GDPLWS
Sbjct: 499 GTDANGDPLWS 509
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 175 FRSKIKKKR-STDAKRPLIETFNSIVNAVLYVVVIYYCQIYNLF*YFN 35
FR+ +KR S + +R I +N + +V Y I+N F YFN
Sbjct: 398 FRNPNSRKRLSEELRRRFIVA--GFLNCLFAPIVAIYLVIHNFFRYFN 443
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -2
Query: 215 LKNFILFLYDISLFQIKNKKKTLNRRKAPTYRNFQFNS 102
+++F L L + S F +KN +R + + NF+F++
Sbjct: 317 IRSFNLDLLNSSFFSLKNFLNFFGKRSSLSLANFRFHT 354
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 308 PQQTVILYGAQGTSKPIPRK*SIHTSTSS 394
P + VILYGA GT K + K ++ TS+
Sbjct: 224 PPKGVILYGAPGTGKTLLAK-AVANQTSA 251
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 510 DNRTFYQFIASFRCQSKMLDESIN*SLGCVG 418
D+ T +FI + QSK DE N L C G
Sbjct: 27 DDNTLAEFIINLHDQSKNYDEFKNNVLSCGG 57
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,582
Number of Sequences: 5004
Number of extensions: 57863
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -