Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_B23
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1048 + 25675563-25675760,25676995-25677051,25677132-256773... 89 3e-18
03_02_0194 + 6322499-6322654,6323540-6323596,6323702-6323907,632... 84 1e-16
10_08_0045 + 14407892-14408068,14408759-14408815,14408899-144091... 81 1e-15
01_06_0875 - 32650150-32650350,32650464-32650788,32650872-326510... 73 1e-13
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 32 0.33
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 29 2.4
07_01_0069 + 505291-505327,505726-505956,506317-506652,507025-50... 29 3.1
11_02_0063 + 7916048-7917135,7917225-7918690,7920177-7920238,792... 28 7.2
03_02_0436 + 8427018-8427707,8429005-8429544 28 7.2
05_07_0365 - 29662703-29662710,29664321-29664378,29664675-296647... 27 9.5
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190... 27 9.5
04_04_0500 - 25677767-25680850 27 9.5
01_03_0281 - 14570635-14574633 27 9.5
01_01_0046 - 331758-332627 27 9.5
>12_02_1048 +
25675563-25675760,25676995-25677051,25677132-25677331,
25677412-25677541,25677642-25677845,25678017-25678088,
25678379-25678546
Length = 342
Score = 89.0 bits (211), Expect = 3e-18
Identities = 49/118 (41%), Positives = 74/118 (62%)
Frame = +1
Query: 262 VLDGGFSSQLSCHVGTTADGDPLWSARYLQTHPQEVINTHLDFLRAGADMIMTNTSQASV 441
V+DGG +++L + G + DPLWSA+ L + P V HLD+L AGA++I+T + QA++
Sbjct: 31 VMDGGLATELEAN-GADLN-DPLWSAKCLLSSPHLVRKVHLDYLEAGANIIITASYQATI 88
Query: 442 NGFVKHLGLTPEAGYELIKSAVVLAKRARDIYVKECKDTKNSHRNSLVVGSIGPYGAY 615
GF + G + E +L+ +V +A+ ARD+++KE D H LV SIG YGAY
Sbjct: 89 QGF-ESKGFSKEQSEDLLAKSVEIAREARDMFLKEHSDRPIQH-PILVAASIGSYGAY 144
>03_02_0194 +
6322499-6322654,6323540-6323596,6323702-6323907,
6324028-6324157,6324285-6324488,6324599-6324670,
6324844-6325008
Length = 329
Score = 83.8 bits (198), Expect = 1e-16
Identities = 47/119 (39%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Frame = +1
Query: 262 VLDGGFSSQLSCHVGTTADGDPLWSARYLQTHPQEVINTHLDFLRAGADMIMTNTSQASV 441
V+DGGF++QL +G + DPLWSA L T P + H+ +L AGAD+I++++ QA++
Sbjct: 17 VIDGGFATQLEA-LGADIN-DPLWSAACLITKPHLIKEVHMQYLEAGADVIISSSYQATI 74
Query: 442 NGFVKHLGLTPEAGYELIKSAVVLAKRARDIYVKEC-KDTKNSHRNSLVVGSIGPYGAY 615
GF+ G+ E L++ ++ LA ARD + K + +K + +LV SIG YGAY
Sbjct: 75 PGFLAR-GMLLEEAEGLLRRSIELALEARDEFWKSTLRKSKPVYNRALVAASIGSYGAY 132
>10_08_0045 +
14407892-14408068,14408759-14408815,14408899-14409125,
14409271-14409400,14409848-14410051,14410127-14410198,
14410468-14410608
Length = 335
Score = 80.6 bits (190), Expect = 1e-15
Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 8/126 (6%)
Frame = +1
Query: 262 VLDGGFSSQLSCHVGTTADGDPLWSARYLQTHPQEVINTHLDFLRAGADMIMTNTSQASV 441
V+DGG +++L + D LWSAR L T P + HLD+L AGA +++T + QA++
Sbjct: 24 VIDGGLATELEANGADLKDA--LWSARCLFTCPDLIRKVHLDYLEAGASVLITGSYQATI 81
Query: 442 NGFVKHLGLTPEAGYELIKSAVVLAKRARDIYVKEC-------KD-TKNSHRNSLVVGSI 597
GF+ G + E ++ +V LA AR IY+++C KD TK R L+ S+
Sbjct: 82 QGFLSK-GFSQEESESFLRRSVELACEARAIYLEKCSNGSDEAKDVTKYRKRPILIAASV 140
Query: 598 GPYGAY 615
G YGAY
Sbjct: 141 GSYGAY 146
>01_06_0875 -
32650150-32650350,32650464-32650788,32650872-32651092,
32651187-32651243,32651333-32651515
Length = 328
Score = 73.3 bits (172), Expect = 1e-13
Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 6/124 (4%)
Frame = +1
Query: 262 VLDGGFSSQLSCHVGTTADGDPLWSARYLQTHPQEVINTHLDFLRAGADMIMTNTSQASV 441
V+DGG +++L H G D LWSA L + P + HLD+L AGA++I + + QA++
Sbjct: 26 VVDGGLATELEAH-GADLH-DELWSASCLVSAPHLIRKVHLDYLDAGANIITSASYQATI 83
Query: 442 NGFVKHLGLTPEAGYELIKSAVVLAKRARDIYVKE-CKDTKNSHRNS-----LVVGSIGP 603
GF + GL+ E L++ +V +A+ AR I+ + K +HR+S LV SIG
Sbjct: 84 QGF-QARGLSRERSEALLRRSVHIAQEARAIFAEGWSKGPYANHRSSPRRPVLVAASIGS 142
Query: 604 YGAY 615
YGAY
Sbjct: 143 YGAY 146
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 32.3 bits (70), Expect = 0.33
Identities = 23/82 (28%), Positives = 38/82 (46%)
Frame = +1
Query: 262 VLDGGFSSQLSCHVGTTADGDPLWSARYLQTHPQEVINTHLDFLRAGADMIMTNTSQASV 441
V+ G + Q+ VG +A GD +W ARY+ E+ + F I + + A
Sbjct: 193 VMPGQWEFQVGPSVGISA-GDQVWVARYILERITEIAGVVVSF---DPKPIPGDWNGAGA 248
Query: 442 NGFVKHLGLTPEAGYELIKSAV 507
+ + + GYE+IKSA+
Sbjct: 249 HTNYSTKSMRNDGGYEIIKSAI 270
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = +1
Query: 262 VLDGGFSSQLSCHVGTTADGDPLWSARYLQTHPQEVINTHLDFLRAGADMIMTNTSQASV 441
V+ G + Q+ VG +A GD +W ARY+ E+ + F I + + A
Sbjct: 220 VMPGQWEFQIGPVVGVSA-GDHVWVARYILERITEIAGVVVSF---DPKPIPGDWNGAGA 275
Query: 442 NGFVKHLGLTPEAGYELIKSAV 507
+ + GYE+IK A+
Sbjct: 276 HTNYSTKSMRSNGGYEVIKKAI 297
>07_01_0069 +
505291-505327,505726-505956,506317-506652,507025-507372,
507735-508594,508902-508971,509157-509371,509477-509537,
509606-509715,510644-510694,510794-510916
Length = 813
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +3
Query: 213 QKIIYDDNSHGQTCGVCSRWRIFFTIVMSCXXXXXXXXXMERKVPPN 353
Q+ I +D ++ G CSR + +V + +E+K+PP+
Sbjct: 765 QEPIIEDRKVAESRGACSRCSVSVCVVTAAVLAAAHPAILEKKLPPD 811
>11_02_0063 +
7916048-7917135,7917225-7918690,7920177-7920238,
7921808-7922407
Length = 1071
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 368 TSWGWVWRYLALHRGSPSAVVPT*HDNCEENPPSRTNTTGL 246
T WG + L + AV+ + CE+NP ++T TGL
Sbjct: 519 TRWGSHHKTLCRLQHMWKAVLEVLENICEDNPTTKTTATGL 559
>03_02_0436 + 8427018-8427707,8429005-8429544
Length = 409
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +1
Query: 256 VFVLDGGFSSQLSCHVGTTADGDPLWSARYLQTHPQEVINTHLDFLRAGADMIMTNTSQA 435
V V+ G S+ + GT DG+ A PQ + + D LRA + + T ++
Sbjct: 324 VLVVTGDDSAAAAACAGTDGDGEQQEEAMQAPMSPQHTVASIQDALRAVMERTASATEES 383
Query: 436 SVNG 447
+G
Sbjct: 384 GGSG 387
>05_07_0365 -
29662703-29662710,29664321-29664378,29664675-29664732,
29665029-29665086,29665737-29665794,29666091-29666134,
29666445-29666502,29666799-29666981,29667154-29667211,
29667508-29667565,29667862-29667919,29668216-29668259,
29668570-29668627,29668924-29669106,29669279-29669336,
29669633-29669676,29669987-29670044,29670341-29670398,
29670696-29670753,29671050-29671052
Length = 420
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 461 RCLTNPLTEAWDVLVIIMSAPARRKSRC 378
RC P +W +L I+ + RR +RC
Sbjct: 387 RCFAEPTAASWPMLWILRYSTFRRNNRC 414
>05_01_0251 +
1901709-1901864,1901968-1901999,1902534-1902664,
1902740-1902821,1902928-1903054,1903369-1903686,
1903785-1903846,1903988-1904074,1904139-1904195,
1906113-1906197,1906916-1907185,1908158-1908254,
1908390-1908436,1908826-1908939,1909024-1909117,
1909360-1909457,1910356-1910455,1911445-1911521,
1911824-1913122
Length = 1110
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 199 KIKFFKK*SMMTTATDKPVVFVLDGGFSSQLSCHVGTTADGDPLWSARYLQTHP 360
K K F T++ P+ +VL F+ + + V DG+PL + LQ P
Sbjct: 241 KTKIFAIGMNTDTSSKFPISYVLKKSFTIEPTMSVPMLTDGEPLKNKEVLQLPP 294
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 271 GGFSSQLSCHVGTTADGDPLWSARYLQ 351
G SS LSCH + + GD L + RY++
Sbjct: 123 GAASSLLSCHARSGSPGDVLGAFRYIR 149
>01_03_0281 - 14570635-14574633
Length = 1332
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 275 DFLHNCHVMSAPQQTVILYGAQ 340
D NCH+ S P++ ILY Q
Sbjct: 597 DLSGNCHIKSLPEEICILYNLQ 618
>01_01_0046 - 331758-332627
Length = 289
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 345 PPNPSPGSNQYTPRLPPS 398
PP P P S++Y P PPS
Sbjct: 27 PPPPPPSSSRYRPPSPPS 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,336,586
Number of Sequences: 37544
Number of extensions: 384591
Number of successful extensions: 1093
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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