Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_B22
(474 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39854-2|AAA81077.2| 703|Caenorhabditis elegans Puf (pumilio/fb... 94 5e-20
U21319-6|AAC46676.3| 535|Caenorhabditis elegans Puf (pumilio/fb... 78 4e-15
Z49967-10|CAA90254.1| 553|Caenorhabditis elegans Hypothetical p... 31 0.56
AC084197-35|AAN63424.1| 505|Caenorhabditis elegans Puf (pumilio... 30 0.74
Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical pr... 29 2.3
AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf (pumilio/... 29 2.3
AF003389-4|AAN63407.1| 598|Caenorhabditis elegans Hypothetical ... 28 3.9
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ... 28 3.9
Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p... 27 5.2
Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical p... 27 5.2
Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr... 27 5.2
AL021488-1|CAB63369.1| 502|Caenorhabditis elegans Hypothetical ... 27 5.2
U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna bind... 27 9.1
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 27 9.1
AC006656-6|AAF39879.1| 614|Caenorhabditis elegans Fem-3 mrna bi... 27 9.1
>U39854-2|AAA81077.2| 703|Caenorhabditis elegans Puf (pumilio/fbf)
domain-containingprotein 9 protein.
Length = 703
Score = 93.9 bits (223), Expect = 5e-20
Identities = 45/87 (51%), Positives = 60/87 (68%)
Frame = +2
Query: 11 VTHATRNERALLIDELCGFNDNREFFSALHVMMKDQYANYVVQKMIDVAEPTQRKVLMHK 190
+T ER L+ID++CG D + L MMKD +ANYVVQKM+DVA+P RK +
Sbjct: 585 LTFGGHAERNLIIDKVCG--DPNDPSPPLLQMMKDPFANYVVQKMLDVADPQHRKKITLT 642
Query: 191 IRPHVGSLRKYTYGKHIIAKLEKFFMK 271
I+PH+ +LRKY +GKHI+ KLEK+F K
Sbjct: 643 IKPHIATLRKYNFGKHILLKLEKYFAK 669
Score = 36.7 bits (81), Expect = 0.009
Identities = 26/73 (35%), Positives = 33/73 (45%)
Frame = +2
Query: 32 ERALLIDELCGFNDNREFFSALHVMMKDQYANYVVQKMIDVAEPTQRKVLMHKIRPHVGS 211
ERA L D+ F E L M D + NYV+QK + QR L+ IR +V
Sbjct: 365 ERASLRDKAAIFTPVLENAEEL---MTDVFGNYVIQKFFEFGNNEQRNQLVGTIRGNVMK 421
Query: 212 LRKYTYGKHIIAK 250
L YG +I K
Sbjct: 422 LALQMYGCRVIQK 434
Score = 32.3 bits (70), Expect = 0.18
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +2
Query: 53 ELCGFNDNREFFSALHVMMK----DQYANYVVQKMIDVAEPTQR-KVLMHKIRPHVGSLR 217
E C + AL + +K DQY NYV+Q +I+ P+ + +++ I +
Sbjct: 513 EYCNEEQKQPVLDALQIHLKQLVLDQYGNYVIQHVIEHGSPSDKEQIVQDVISDDLLKFA 572
Query: 218 KYTYGKHIIAKLEKF 262
++ + ++I K F
Sbjct: 573 QHKFASNVIEKCLTF 587
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = +2
Query: 107 MKDQYANYVVQKMIDVAEPTQRKVLMHKI----RPHVGSLRKYTYGKHIIAKLEKF 262
+KDQ N+V+QK+I+ EP + + ++ +V +L + YG +I ++ ++
Sbjct: 459 VKDQNGNHVIQKVIERVEPERLQFIIDAFTKNNSDNVYTLSVHPYGCRVIQRVLEY 514
>U21319-6|AAC46676.3| 535|Caenorhabditis elegans Puf (pumilio/fbf)
domain-containingprotein 8 protein.
Length = 535
Score = 77.8 bits (183), Expect = 4e-15
Identities = 34/56 (60%), Positives = 43/56 (76%)
Frame = +2
Query: 104 MMKDQYANYVVQKMIDVAEPTQRKVLMHKIRPHVGSLRKYTYGKHIIAKLEKFFMK 271
MMKDQYANYVVQKM D QR+ L+ +RPH+ LR++ +GKHI+AKLEK+F K
Sbjct: 465 MMKDQYANYVVQKMFDQVTSEQRRELILTVRPHIPVLRQFPHGKHILAKLEKYFQK 520
Score = 31.5 bits (68), Expect = 0.32
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 113 DQYANYVVQKMIDVAEPTQRKVLMHKIRPHVGSLRKYTYGKHIIAK 250
+QY NYVVQ +I+ R V++ ++ ++ + Y ++I K
Sbjct: 389 NQYGNYVVQHVIEHGSEEDRMVIVTRVSNNLFEFATHKYSSNVIEK 434
Score = 29.9 bits (64), Expect = 0.98
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +2
Query: 80 EFFSALHVMMKDQYANYVVQKMIDVAEPTQRKVLMHKIRPHVGSLRKYTYGKHII 244
E + ++ M D Y VVQ+ ++ P+Q K ++ +I + YG +++
Sbjct: 342 ESSNTIYEMSVDPYGCRVVQRCLEHCSPSQTKPVIGQIHKRFDEIANNQYGNYVV 396
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 95 LHVMMKDQYANYVVQKMIDVAEP 163
+H MKDQ N+VVQK I+ P
Sbjct: 308 IHRCMKDQNGNHVVQKAIEKVSP 330
>Z49967-10|CAA90254.1| 553|Caenorhabditis elegans Hypothetical
protein F54C9.8 protein.
Length = 553
Score = 30.7 bits (66), Expect = 0.56
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 19/75 (25%)
Frame = +2
Query: 92 ALHVMMKDQYANYVVQKMIDVA-----EPTQRKV--------------LMHKIRPHVGSL 214
AL +++ QY NYVVQ+MI + +RK+ + +++ H G L
Sbjct: 437 ALDILLFHQYGNYVVQQMISICISALLGKEERKMVASEMRLYAKWFDRIKNRVNRHSGRL 496
Query: 215 RKYTYGKHIIAKLEK 259
+++ GK II L+K
Sbjct: 497 ERFSSGKKIIESLQK 511
>AC084197-35|AAN63424.1| 505|Caenorhabditis elegans Puf
(pumilio/fbf) domain-containingprotein 11 protein.
Length = 505
Score = 30.3 bits (65), Expect = 0.74
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 92 ALHVMMKDQYANYVVQKMIDV 154
AL +++ QY NYVVQKMI +
Sbjct: 432 ALDILLFHQYGNYVVQKMIQI 452
>Z81507-1|CAB04133.1| 485|Caenorhabditis elegans Hypothetical
protein F18A11.1 protein.
Length = 485
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 92 ALHVMMKDQYANYVVQKMIDV 154
AL +++ QY NYVVQ+MI +
Sbjct: 377 ALDILLFHQYGNYVVQQMISI 397
>AF036698-2|AAB88353.1| 485|Caenorhabditis elegans Puf
(pumilio/fbf) domain-containingprotein 7 protein.
Length = 485
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 92 ALHVMMKDQYANYVVQKMIDV 154
AL +++ QY NYVVQ+MI +
Sbjct: 377 ALDILLFHQYGNYVVQQMISI 397
>AF003389-4|AAN63407.1| 598|Caenorhabditis elegans Hypothetical
protein F23H11.4b protein.
Length = 598
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 445 PLYLQMYNHKYSHNV*EAGGGTPAPSHQPTRSADVNTLRRLL 320
PLYL + ++ G TP+PS+ PT S D + LR L
Sbjct: 149 PLYLSLDTYR------SISGITPSPSNAPTTSPDCDELREWL 184
>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
protein F23H11.4a protein.
Length = 1003
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 445 PLYLQMYNHKYSHNV*EAGGGTPAPSHQPTRSADVNTLRRLL 320
PLYL + ++ G TP+PS+ PT S D + LR L
Sbjct: 149 PLYLSLDTYR------SISGITPSPSNAPTTSPDCDELREWL 184
>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
protein C53B4.4e protein.
Length = 1544
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 255 SSFAIMCFP*VYLRNEPTCGRILCINTLRCVGSATS 148
S+ MC ++LRN +C R L I +CV A S
Sbjct: 1226 STTCAMCRGKIWLRNASSCSRCLVICHNKCVVKANS 1261
>Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical
protein C53B4.4d protein.
Length = 1301
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 255 SSFAIMCFP*VYLRNEPTCGRILCINTLRCVGSATS 148
S+ MC ++LRN +C R L I +CV A S
Sbjct: 946 STTCAMCRGKIWLRNASSCSRCLVICHNKCVVKANS 981
>Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical protein
C53B4.4c protein.
Length = 1304
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 255 SSFAIMCFP*VYLRNEPTCGRILCINTLRCVGSATS 148
S+ MC ++LRN +C R L I +CV A S
Sbjct: 946 STTCAMCRGKIWLRNASSCSRCLVICHNKCVVKANS 981
>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical protein
C53B4.4b protein.
Length = 1586
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 255 SSFAIMCFP*VYLRNEPTCGRILCINTLRCVGSATS 148
S+ MC ++LRN +C R L I +CV A S
Sbjct: 1228 STTCAMCRGKIWLRNASSCSRCLVICHNKCVVKANS 1263
>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical protein
C53B4.4a protein.
Length = 1584
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 255 SSFAIMCFP*VYLRNEPTCGRILCINTLRCVGSATS 148
S+ MC ++LRN +C R L I +CV A S
Sbjct: 1226 STTCAMCRGKIWLRNASSCSRCLVICHNKCVVKANS 1261
>AL021488-1|CAB63369.1| 502|Caenorhabditis elegans Hypothetical
protein Y45F10A.2 protein.
Length = 502
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 92 ALHVMMKDQYANYVVQKMI 148
AL +++ QY NYVVQ+MI
Sbjct: 429 ALDILLFHQYGNYVVQQMI 447
>U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna binding
factor protein 2 protein.
Length = 632
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 92 ALHVMMKDQYANYVVQKMIDV 154
AL +MM Q+ NYVVQ M+ +
Sbjct: 489 ALDIMMFHQFGNYVVQCMLTI 509
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = -1
Query: 120 YWSFIITWR--ALKNSRLSLKPQSSS 49
Y+SF++TW A S+LS+ P+S S
Sbjct: 717 YYSFLLTWSSPAATRSQLSIAPRSHS 742
>AC006656-6|AAF39879.1| 614|Caenorhabditis elegans Fem-3 mrna
binding factor protein 1 protein.
Length = 614
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 92 ALHVMMKDQYANYVVQKMIDV 154
AL +MM Q+ NYVVQ M+ +
Sbjct: 487 ALDIMMFHQFGNYVVQCMLTI 507
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,823,431
Number of Sequences: 27780
Number of extensions: 180089
Number of successful extensions: 518
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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