Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B21
         (526 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    43   2e-04
Z70035-12|CAB76726.1|  150|Caenorhabditis elegans Hypothetical p...    39   0.003
Z70035-8|CAA93868.2|  446|Caenorhabditis elegans Hypothetical pr...    38   0.004
Z70035-7|CAA93867.1|  369|Caenorhabditis elegans Hypothetical pr...    33   0.17 
Z70035-6|CAA93866.1|  444|Caenorhabditis elegans Hypothetical pr...    32   0.29 
U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr...    31   0.50 
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    30   1.2  
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    30   1.2  
AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical ...    29   2.0  
AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical ...    29   2.0  
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    28   3.6  
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    28   3.6  
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    28   3.6  
Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    27   8.2  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    27   8.2  
AL110490-9|CAB54453.2|  607|Caenorhabditis elegans Hypothetical ...    27   8.2  
AF039650-1|AAC14022.3|  607|Caenorhabditis elegans acetylcholine...    27   8.2  
AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical ...    27   8.2  

>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +2

Query: 143 CYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMVSLNENLDIDRA-HA 319
           CY+ + +  R+ +A+ +P D  P L  CTH+L+    + AD         +L  D A   
Sbjct: 57  CYFTNWAQYRQGRAKFVPEDYTPGL--CTHILFAFGWMNADYTVRAYDPADLPNDWAGEG 114

Query: 320 NYRAITNLKRQFPQLRVFLTVGG 388
            YR +  LK    QL+  L+ GG
Sbjct: 115 MYRRVNKLKVTDTQLKTLLSFGG 137


>Z70035-12|CAB76726.1|  150|Caenorhabditis elegans Hypothetical
           protein R09D1.14 protein.
          Length = 150

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 29/125 (23%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
 Frame = +2

Query: 101 TNHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMV 280
           + +PA+P    +++ YY +      +Q  ++ +D    +S  TH ++    I +D    +
Sbjct: 33  STYPATPGCNKRIIGYYFA------TQTSVITSD---QVSNLTHAVFAFVNITSDGQLQI 83

Query: 281 SLNENLDIDRAHANYRAITNL-KRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAF 457
                 D D A   +  +  + K+Q PQ++V +++GG+D++ +   +  +L SP  +  F
Sbjct: 84  ------DGDLAKNRFTNLIEIAKQQTPQVKVMISIGGNDNSNN---FKPVLSSPDRKKLF 134

Query: 458 TNSAL 472
            NS +
Sbjct: 135 INSTV 139


>Z70035-8|CAA93868.2|  446|Caenorhabditis elegans Hypothetical
           protein R09D1.8 protein.
          Length = 446

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 28/125 (22%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
 Frame = +2

Query: 101 TNHPASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPALSFCTHLLYKSAGIQADTYKMV 280
           + +PA+P    +++ YY +      +Q  ++  D    +S  TH ++    + +D +  +
Sbjct: 75  STYPATPGCNKRIIGYYFA------TQTSVITRD---QVSKLTHAVFAFVNMTSDGHLQI 125

Query: 281 SLNENLDIDRAHANYRAITNL-KRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAF 457
                 D D A   +  +  + K+Q PQ++V +++GG+D++ +   +  +L SP  +  F
Sbjct: 126 ------DGDLAKNRFTNLIEIAKQQTPQVKVMISIGGNDNSNN---FKPVLSSPDRKKLF 176

Query: 458 TNSAL 472
            NS +
Sbjct: 177 INSTV 181


>Z70035-7|CAA93867.1|  369|Caenorhabditis elegans Hypothetical
           protein R09D1.7 protein.
          Length = 369

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +2

Query: 344 KRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFTNS 466
           K+Q P ++V +++GGDD++ +  K   +L SP  R  F N+
Sbjct: 65  KQQTPPVKVMISIGGDDNSNNFYK---VLNSPNRRKVFLNA 102


>Z70035-6|CAA93866.1|  444|Caenorhabditis elegans Hypothetical
           protein R09D1.6 protein.
          Length = 444

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
 Frame = +2

Query: 293 NLDIDRAHANYRAITNL----KRQFPQLRVFLTVGGDDDTEDPQKYNLLLESPQARTAFT 460
           +L ID   A  R  TNL    K+Q PQ++V +++GG+D++ +   +   L SP  +  F 
Sbjct: 120 HLQIDGDLAKNR-FTNLIEIAKQQTPQVKVMISIGGNDNSNN---FKPGLSSPDRKKLFI 175

Query: 461 NSAL 472
           NS +
Sbjct: 176 NSTV 179


>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical
           protein C25A8.4 protein.
          Length = 1067

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +2

Query: 179 QARMLPTDLEPALSFCTHLLYKSAGIQADT----YKMVSLNENLDIDRAHANYRAITNLK 346
           + R+ P  L+  ++ CTHL+Y S  I  DT    Y +  +    DID    N R    L+
Sbjct: 37  KTRLSPNLLQN-ITTCTHLVYGSIPIDRDTGYPQYSVSDVESGYDID----NIRTFMRLR 91

Query: 347 RQFPQLRVFLTVGGDDDTED 406
           +  P  ++ + V      ED
Sbjct: 92  KYHPNAKLLMGVVRTKPFED 111


>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +2

Query: 221 FCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDT 400
           F  +L  K  GI A  YK+VSLN  L++   +    A  N  R+     +F  +  DDD 
Sbjct: 511 FSRYLHTKQRGIPAKVYKVVSLNSCLEVCAGNPTC-AGANYNRRLGDCTLFDAI--DDDA 567

Query: 401 E 403
           E
Sbjct: 568 E 568


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +2

Query: 221 FCTHLLYKSAGIQADTYKMVSLNENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDT 400
           F  +L  K  GI A  YK+VSLN  L++   +    A  N  R+     +F  +  DDD 
Sbjct: 507 FSRYLHTKQRGIPAKVYKVVSLNSCLEVCAGNPTC-AGANYNRRLGDCTLFDAI--DDDA 563

Query: 401 E 403
           E
Sbjct: 564 E 564


>AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical
           protein Y73F8A.9 protein.
          Length = 419

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 266 CQLGCRQICTADGCRTKEQAPSP 198
           CQ  C+Q C    C T+  AP+P
Sbjct: 103 CQSSCQQTCQTSSCYTQIAAPAP 125


>AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical
           protein Y73F8A.8 protein.
          Length = 420

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 266 CQLGCRQICTADGCRTKEQAPSP 198
           CQ  C+Q C    C T+  AP+P
Sbjct: 104 CQSSCQQTCQTSSCYTQIAAPAP 126


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 287  NENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLES 436
            N   D+D AH + R++ + + Q+   R  L     +   D  KY L + S
Sbjct: 1780 NLRTDLDNAHTDIRSLRDKEEQWDSSRFQLETKMRESDSDTNKYQLQIAS 1829


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 287  NENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLES 436
            N   D+D AH + R++ + + Q+   R  L     +   D  KY L + S
Sbjct: 1853 NLRTDLDNAHTDIRSLRDKEEQWDSSRFQLETKMRESDSDTNKYQLQIAS 1902


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 287  NENLDIDRAHANYRAITNLKRQFPQLRVFLTVGGDDDTEDPQKYNLLLES 436
            N   D+D AH + R++ + + Q+   R  L     +   D  KY L + S
Sbjct: 1853 NLRTDLDNAHTDIRSLRDKEEQWDSSRFQLETKMRESDSDTNKYQLQIAS 1902


>Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical
           protein T13H5.3 protein.
          Length = 626

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 483 EQYGFDGIDLSWQ 521
           ++YGFDG+D+ W+
Sbjct: 131 KEYGFDGVDIDWE 143


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 525  VIAKIDRSRQNHIAQARRRAELVKA 451
            V+ K++ SR+N +   RRR E+++A
Sbjct: 1049 VVEKMEESRKNQLEIVRRRFEMIRA 1073


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 525  VIAKIDRSRQNHIAQARRRAELVKA 451
            V+ K++ SR+N +   RRR E+++A
Sbjct: 1049 VVEKMEESRKNQLEIVRRRFEMIRA 1073


>AL110490-9|CAB54453.2|  607|Caenorhabditis elegans Hypothetical
           protein Y48B6A.8 protein.
          Length = 607

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 288 LSETILYVSAWMPADLYS 235
           +SE  LYV+ W PAD Y+
Sbjct: 116 VSEDCLYVNIWAPADAYN 133


>AF039650-1|AAC14022.3|  607|Caenorhabditis elegans
           acetylcholinesterase protein.
          Length = 607

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 288 LSETILYVSAWMPADLYS 235
           +SE  LYV+ W PAD Y+
Sbjct: 116 VSEDCLYVNIWAPADAYN 133


>AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical
           protein W08E12.2 protein.
          Length = 120

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 242 CTADGCRTKEQAPSP*AAYVLEIL*YSSCCHSSRGLCFGY 123
           C+ + C     AP    +Y      YSSCC+S+   C GY
Sbjct: 65  CSCNPCNGGGCAPR--CSYCPNNFGYSSCCNSNNFSCCGY 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,093,097
Number of Sequences: 27780
Number of extensions: 208291
Number of successful extensions: 608
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)