Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B20
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0812 + 27890030-27890219,27890618-27890916,27891603-278918...    28   4.8  
07_03_0766 - 21354494-21354772,21355094-21355247,21355340-213555...    27   8.4  

>03_05_0812 +
           27890030-27890219,27890618-27890916,27891603-27891840,
           27892098-27892433,27892522-27892607,27892703-27892810,
           27892918-27893225,27893304-27893567,27893660-27894431
          Length = 866

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = -3

Query: 370 DSTSPAFNRRHVVKTVV*YHQNDLDLWHVNQVRIGVFFIVFYSSESNL 227
           D+TSP +  R ++K    Y  + L++WH  +  +G +  ++Y+ +  L
Sbjct: 616 DATSP-YKVRLLIKDYP-YAADGLEIWHAIEQWVGEYLAIYYTDDGVL 661


>07_03_0766 -
           21354494-21354772,21355094-21355247,21355340-21355577,
           21355659-21355866,21356148-21356275,21356384-21356521,
           21357234-21358080
          Length = 663

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 40  SPGCRIGRGF*LVYDQCFIRFS 105
           +P C   R   LVY+QC+ RFS
Sbjct: 106 APACNRTRDAILVYNQCYTRFS 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,502,237
Number of Sequences: 37544
Number of extensions: 171484
Number of successful extensions: 337
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)