Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B19
         (238 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    29   0.11 
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    24   2.3  
SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    24   3.1  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    23   4.1  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    23   7.1  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    23   7.1  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    22   9.4  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    22   9.4  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    22   9.4  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    22   9.4  

>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 28.7 bits (61), Expect = 0.11
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 53  FQLNMRLNLVRS-SWHNSTEIHYVNIVI*RVTRYLTKMVIFIQKLW 187
           + LN   N +R  SW +ST+ +YV+++I  V R L   ++    +W
Sbjct: 302 YDLNFCNNFIRKLSWSSSTKSNYVSLLIAMVVRELVFAILPRGCIW 347


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 26  LCPSTLQQLFQLNMRLNLVRSSWHNSTEIHYVNIVI*RVTRYL 154
           L P   +    ++  LN V+S WH+    +Y      RV +YL
Sbjct: 849 LTPENSKGKLSIDHFLNKVQSRWHDEEHHYYKTGFRKRVYKYL 891


>SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 182

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 5   TNRLQNELCPSTLQQLFQLNMRLNLVRSSWHNSTEIHYVNIV 130
           +N+LQ E C   + ++ +  + L  +RSS   +  + Y  I+
Sbjct: 59  SNKLQQEFCIMDINKVGRNFISLGKIRSSKRRNAILSYQTII 100


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 32  PSTLQQLFQLNMRLNLVRSSWHNSTEIHYVN 124
           P +   +   N R   +R  +HN  +IH VN
Sbjct: 476 PLSTSNVIPENNRQQFIRCVFHNIMQIHAVN 506


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 154 NEDGDIYTKAMVGFDLL 204
           NE+GD+ T ++ G D L
Sbjct: 422 NENGDLITNSLHGLDFL 438


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 119 RSGFL*NYATKIVPDLDA 66
           +SGF+  YA ++VP L A
Sbjct: 424 KSGFIPPYAKRVVPRLSA 441


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 34  IYSPTVVSVKYASKSGTIFVA 96
           I+   +VSVK ++ SG +F+A
Sbjct: 253 IFPGQIVSVKGSNPSGNMFIA 273


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 224 HMYWLLGSKSNPT 186
           + YW++GS SN T
Sbjct: 406 YAYWIIGSLSNDT 418


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +1

Query: 160 DGDIYTKAMVGFDLLPRSQY 219
           DG  Y     GFD  PR  Y
Sbjct: 733 DGSFYFSQNGGFDFEPRQNY 752


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 8   NRLQNELCPSTLQQLFQLNMRLNLVRSSWHNSTEIH 115
           +R+  +L PS+  Q   L+    L  S WHN   +H
Sbjct: 11  HRVPVKLSPSSTLQEVILSSYKQLGFSDWHNLELLH 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,032,651
Number of Sequences: 5004
Number of extensions: 17866
Number of successful extensions: 31
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)