Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B19
         (238 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0055 - 28095996-28096934                                         27   2.1  
11_08_0054 - 28091294-28092208                                         27   2.1  
09_02_0569 - 10752756-10753164,10753229-10753644,10754149-107553...    27   2.8  
05_01_0154 + 1020650-1022050,1022304-1022373,1022496-1022617,102...    25   6.5  
01_06_0928 + 33085403-33089224                                         25   6.5  

>11_08_0055 - 28095996-28096934
          Length = 312

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 148 SCDTSDYNIDVVDFCRIMPRRSY 80
           +CDT DYNI ++ F  +     Y
Sbjct: 59  TCDTGDYNIVIISFLSVFGHGKY 81


>11_08_0054 - 28091294-28092208
          Length = 304

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 148 SCDTSDYNIDVVDFCRIMPRRSY 80
           +CDT DYNI ++ F  +     Y
Sbjct: 51  TCDTGDYNIVIISFLSVFGHGKY 73


>09_02_0569 -
           10752756-10753164,10753229-10753644,10754149-10755349,
           10756770-10756991,10757615-10757767,10757883-10758034,
           10758142-10758222,10758353-10758598,10759394-10759516
          Length = 1000

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 142 HKIPNEDGDIYTKAMVGFDLLP 207
           HK+P+ + D+Y+   + +D LP
Sbjct: 687 HKVPDVENDLYSVLYISYDNLP 708


>05_01_0154 +
           1020650-1022050,1022304-1022373,1022496-1022617,
           1022753-1023031,1023402-1023779,1024079-1024188,
           1024394-1024622,1024725-1025303
          Length = 1055

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 130 NLTCHKIPNEDGDIYTKAMVGF 195
           N T H++P++D DI  K  + F
Sbjct: 207 NKTAHQVPHDDADIQAKECMVF 228


>01_06_0928 + 33085403-33089224
          Length = 1273

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/38 (23%), Positives = 23/38 (60%)
 Frame = -2

Query: 201  QVKSNHSFCINITIFVRYLVTRQITILT*WISVELCHE 88
            Q +  HS  I+ ++ + Y+++ +  +L  ++S+E C +
Sbjct: 1122 QFRVQHSLHISSSLILNYMLSAEAFVLPAYLSLERCKD 1159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,258,142
Number of Sequences: 37544
Number of extensions: 100296
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)