Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_B19
(238 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone... 26 4.1
U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone... 26 4.1
U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone... 26 4.1
U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone... 26 4.1
U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone... 26 4.1
AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear recep... 26 4.1
AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear recep... 26 4.1
CU457740-3|CAM36333.1| 367|Caenorhabditis elegans Hypothetical ... 25 7.2
L14730-2|AAB37562.2| 187|Caenorhabditis elegans C.elegans homeo... 25 9.5
AY647457-1|AAT67384.1| 187|Caenorhabditis elegans homeobox gene... 25 9.5
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ... 25 9.5
AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical ... 25 9.5
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related... 25 9.5
>U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform b protein.
Length = 400
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 79 GTIFVA*FYRNPLRQYCNLTCHKIPNEDGDIYTKAMV 189
G++F A FY PL + I NE D+YT+ M+
Sbjct: 302 GSVF-AIFYEYPLPPKVSYASTHILNEARDLYTQCMI 337
>U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform c protein.
Length = 440
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 79 GTIFVA*FYRNPLRQYCNLTCHKIPNEDGDIYTKAMV 189
G++F A FY PL + I NE D+YT+ M+
Sbjct: 342 GSVF-AIFYEYPLPPKVSYASTHILNEARDLYTQCMI 377
>U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform d protein.
Length = 446
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 79 GTIFVA*FYRNPLRQYCNLTCHKIPNEDGDIYTKAMV 189
G++F A FY PL + I NE D+YT+ M+
Sbjct: 348 GSVF-AIFYEYPLPPKVSYASTHILNEARDLYTQCMI 383
>U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform a protein.
Length = 448
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 79 GTIFVA*FYRNPLRQYCNLTCHKIPNEDGDIYTKAMV 189
G++F A FY PL + I NE D+YT+ M+
Sbjct: 350 GSVF-AIFYEYPLPPKVSYASTHILNEARDLYTQCMI 385
>U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform e protein.
Length = 450
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 79 GTIFVA*FYRNPLRQYCNLTCHKIPNEDGDIYTKAMV 189
G++F A FY PL + I NE D+YT+ M+
Sbjct: 352 GSVF-AIFYEYPLPPKVSYASTHILNEARDLYTQCMI 387
>AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear receptor
NHR-21b protein.
Length = 400
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 79 GTIFVA*FYRNPLRQYCNLTCHKIPNEDGDIYTKAMV 189
G++F A FY PL + I NE D+YT+ M+
Sbjct: 302 GSVF-AIFYEYPLPPKVSYASTHILNEARDLYTQCMI 337
>AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear receptor
NHR-21a protein.
Length = 458
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 79 GTIFVA*FYRNPLRQYCNLTCHKIPNEDGDIYTKAMV 189
G++F A FY PL + I NE D+YT+ M+
Sbjct: 360 GSVF-AIFYEYPLPPKVSYASTHILNEARDLYTQCMI 395
>CU457740-3|CAM36333.1| 367|Caenorhabditis elegans Hypothetical
protein C50E10.3 protein.
Length = 367
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 50 LFQLNMRLNLVRSSWHNSTEIHYVNIVI*RVTRYLTKMVIFIQKLWLDLTCFRE 211
LFQ M L++V +N + ++N++I + M+IF+ W +L E
Sbjct: 173 LFQQFMVLSIVYLLTYNLMK--FINVLIFLIAMNFLPMLIFLGNRWFNLKIVNE 224
>L14730-2|AAB37562.2| 187|Caenorhabditis elegans C.elegans homeobox
protein 16 protein.
Length = 187
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 10 PAPK*TMPIYSPTVVSVKYASKSGTIFVA 96
P+P + P SP+ +S +AS +GT +A
Sbjct: 18 PSPTISTPATSPSSISPTFASPNGTPNIA 46
>AY647457-1|AAT67384.1| 187|Caenorhabditis elegans homeobox gene 16
protein.
Length = 187
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 10 PAPK*TMPIYSPTVVSVKYASKSGTIFVA 96
P+P + P SP+ +S +AS +GT +A
Sbjct: 18 PSPTISTPATSPSSISPTFASPNGTPNIA 46
>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
repeats, ras-likedomain, kinase protein 1 protein.
Length = 2395
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 14 LQNELCPSTLQQLFQLNMRLNLVRSSWHNSTEIH 115
L + LCPS QL + L ++S W + +H
Sbjct: 487 LPSSLCPSKAAQLNWNSANLEQLQSDWFVAAALH 520
>AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical
protein Y71D11A.5 protein.
Length = 508
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 167 IFIQKLWLDLTCFREASTYDSH 232
+ ++KLW +CF + T D H
Sbjct: 140 VLLEKLWTPNSCFINSKTADIH 161
>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
kinase protein.
Length = 2393
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 14 LQNELCPSTLQQLFQLNMRLNLVRSSWHNSTEIH 115
L + LCPS QL + L ++S W + +H
Sbjct: 485 LPSSLCPSKAAQLNWNSANLEQLQSDWFVAAALH 518
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,594,992
Number of Sequences: 27780
Number of extensions: 95734
Number of successful extensions: 226
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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