Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B18
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.2  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    27   1.6  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    27   2.8  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   3.7  
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.5  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   8.6  

>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 74  DIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYL 202
           DIV  F      ++  K  +   +T+LVD   SK +T+I  YL
Sbjct: 228 DIVFGFWNNIIEKRFSKSFIDSYLTRLVDIAISKNVTEIMYYL 270


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 598 LELRCHRHYDDRHTQIFQLRFEYYTANKF 512
           L++R H   +D HT I+ + F+  + NKF
Sbjct: 6   LQIRWHYDANDDHTPIYSVDFQKNSLNKF 34


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 469 ENVFNSTGAEWKIQKRLFTQNNIGQTKFYFECIHKVDNVLFIFV-ECITSSF 317
           E +F++      I  ++F +++I    F+  C H V N LF+F    IT+SF
Sbjct: 17  EVLFSAISFGISIYIKVFGRSSI--VTFFLLCFHLVPNALFLFPWTIITTSF 66


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -3

Query: 441 NGRSRSDFSLKTILDKPSFILSV 373
           N R++++ SLK +  +PSF+L+V
Sbjct: 16  NTRTKAELSLKQLEKEPSFVLAV 38


>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 128

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
 Frame = -3

Query: 459 LTAPAR-NGRSRSDFSLKTILDKPSFILSVSIKSITFFSYLS-------NVSHPVLTKG 307
           +T P R NG S   F+L T    PS+ LS +      F Y+S       + SHP ++ G
Sbjct: 1   MTGPFRYNGGSVRSFALTTNFSFPSYDLSFNETEHGVFCYVSRPLTKERSCSHPYISLG 59


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +2

Query: 248 DLKLKSSKLHFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIKLGLSNIVLSEKSL 427
           DLKL++ KL    K   ER   ++   +T    EKN+ +     + ++  +   L+ K  
Sbjct: 326 DLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQKLNNKEA 385

Query: 428 L----DLPFRAGAVK 460
           L    D  FRA  +K
Sbjct: 386 LISHYDDDFRAKELK 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,079
Number of Sequences: 5004
Number of extensions: 46312
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)