Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_B18
(611 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 31 0.86
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 30 1.1
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 30 1.1
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 30 1.1
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 30 1.1
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 30 1.1
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 30 1.1
Z92826-8|CAI79117.1| 325|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81475-12|CAI79149.1| 325|Caenorhabditis elegans Hypothetical p... 29 2.6
U41019-5|ABN43092.1| 134|Caenorhabditis elegans Hypothetical pr... 29 2.6
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 28 6.0
Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z49128-1|CAA88953.1| 379|Caenorhabditis elegans Hypothetical pr... 27 8.0
AF067618-2|AAC19195.1| 920|Caenorhabditis elegans Nuclear hormo... 27 8.0
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 30.7 bits (66), Expect = 0.86
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3
Query: 3 TRPTRTSLTPSETFINSKCQTSKQILSSPS 92
+RP++T LTPSE I S S+Q S+PS
Sbjct: 825 SRPSKTLLTPSELPIISNLPASRQSTSAPS 854
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 44 YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKY 223
Y L++PN Q + ++ SN+ D L +L D+ K K +I L T K
Sbjct: 4354 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDKVKPEIVSGLIPTTVKQ 4413
Query: 224 PYPILYDTDLK--LKSSKLHFDDKE 292
++ +K +K K + + KE
Sbjct: 4414 GETATFNVKVKGPVKQVKWYKNGKE 4438
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 44 YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKY 223
Y L++PN Q + ++ SN+ D L +L D+ K K +I L T K
Sbjct: 3714 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDKVKPEIVSGLIPTTVKQ 3773
Query: 224 PYPILYDTDLK--LKSSKLHFDDKE 292
++ +K +K K + + KE
Sbjct: 3774 GETATFNVKVKGPVKQVKWYKNGKE 3798
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 44 YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKY 223
Y L++PN Q + ++ SN+ D L +L D+ K K +I L T K
Sbjct: 4354 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDKVKPEIVSGLIPTTVKQ 4413
Query: 224 PYPILYDTDLK--LKSSKLHFDDKE 292
++ +K +K K + + KE
Sbjct: 4414 GETATFNVKVKGPVKQVKWYKNGKE 4438
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 44 YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKY 223
Y L++PN Q + ++ SN+ D L +L D+ K K +I L T K
Sbjct: 4354 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDKVKPEIVSGLIPTTVKQ 4413
Query: 224 PYPILYDTDLK--LKSSKLHFDDKE 292
++ +K +K K + + KE
Sbjct: 4414 GETATFNVKVKGPVKQVKWYKNGKE 4438
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 44 YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKY 223
Y L++PN Q + ++ SN+ D L +L D+ K K +I L T K
Sbjct: 3714 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDKVKPEIVSGLIPTTVKQ 3773
Query: 224 PYPILYDTDLK--LKSSKLHFDDKE 292
++ +K +K K + + KE
Sbjct: 3774 GETATFNVKVKGPVKQVKWYKNGKE 3798
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 44 YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKY 223
Y L++PN Q + ++ SN+ D L +L D+ K K +I L T K
Sbjct: 4354 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDKVKPEIVSGLIPTTVKQ 4413
Query: 224 PYPILYDTDLK--LKSSKLHFDDKE 292
++ +K +K K + + KE
Sbjct: 4414 GETATFNVKVKGPVKQVKWYKNGKE 4438
>Z92826-8|CAI79117.1| 325|Caenorhabditis elegans Hypothetical
protein C18D11.7 protein.
Length = 325
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +2
Query: 179 ITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFD 340
I D K ++A + P I Y + +K+ HF ER E PF + DT+D
Sbjct: 39 IKDRKFHIAAFFKETP-EIEYQSSVKIWFKDEHFSYYERSEPFPFEEKCEDTYD 91
>Z81475-12|CAI79149.1| 325|Caenorhabditis elegans Hypothetical
protein C18D11.7 protein.
Length = 325
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +2
Query: 179 ITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFD 340
I D K ++A + P I Y + +K+ HF ER E PF + DT+D
Sbjct: 39 IKDRKFHIAAFFKETP-EIEYQSSVKIWFKDEHFSYYERSEPFPFEEKCEDTYD 91
>U41019-5|ABN43092.1| 134|Caenorhabditis elegans Hypothetical
protein C04E7.5 protein.
Length = 134
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -2
Query: 568 DRHTQIFQLRFEYYTANKFE*DELIDARLRHCQENVFNSTGAEWKIQKRLFTQNNIGQTK 389
+ H +++ L E+YT + E + + LRH +EN F K QK + ++ G T+
Sbjct: 59 EEHNKVYNLSIEFYTEKRRERFDRMKCSLRH-RENAFIQEVIRRK-QKMVEKKHYDGTTQ 116
Query: 388 F 386
F
Sbjct: 117 F 117
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 27.9 bits (59), Expect = 6.0
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +2
Query: 155 VDNLKSKQITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDT 334
V+NL S ++ K YL + P L D DL+ ++L D + E++ F++ DT
Sbjct: 6 VENLFSLCDSESKGYLTMEDLRKVCPQLDDNDLRFIFTELDQDGSGKIEKLEFLRGFQDT 65
Query: 335 FDKYEKNVIDFM 370
E + ++ M
Sbjct: 66 VQHGESHGLNGM 77
>Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical
protein C29E6.4 protein.
Length = 906
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 480 DTVKRTCLTAPARNGRSRSDFSLKTILDKPSFILSVSIKSI 358
D + C+ AR R +F + D PSF +S+ +KSI
Sbjct: 166 DYYENNCVHPTARCPNGRIEFVVTRKADVPSFGISLGVKSI 206
>Z49128-1|CAA88953.1| 379|Caenorhabditis elegans Hypothetical
protein M03C11.1 protein.
Length = 379
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 197 YLAGHTSKYPYPILYDTDL-KLKSSKLHFDDKERYERMPFVK 319
Y+A S PYP + TDL + +S L FD ++R + +K
Sbjct: 242 YVAFRESSIPYPAHWPTDLIQFINSMLKFDKEKRLVGLEAIK 283
>AF067618-2|AAC19195.1| 920|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 266 protein.
Length = 920
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = +2
Query: 269 KLHFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIKLGLSNIVLSEKSLLDLPF 442
K+ + +E + + P +K + F + + DFM +++ + LS I K + ++PF
Sbjct: 600 KIKQEIEETWSKYPELKKSLEKFRSNKMKLDDFMISVRTEKNLSQIGSIYKEVSNIPF 657
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,260,531
Number of Sequences: 27780
Number of extensions: 253261
Number of successful extensions: 647
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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