Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B17
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    27   1.0  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    25   4.1  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    25   5.4  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.4  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   5.4  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   7.2  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    25   7.2  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    24   9.5  

>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 386 ISENFILPNQDIYHHDLHF 442
           +S+NFILPN D+  H L F
Sbjct: 614 LSQNFILPNVDVARHVLLF 632


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 78  YFSCFHQ*TFVLKKKKKNCETSSPSC 1
           Y  CF+   F LKK +K  E   P C
Sbjct: 85  YLICFYSSGFPLKKAEKYVELRKPFC 110


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -1

Query: 143 IL*WPIIL*SFCCIFYQPLIYYIFHVFTN 57
           IL WP++  +F C+ +   +Y +  ++ N
Sbjct: 73  ILRWPLMFTAFLCLTFVAFLYLLDRLYIN 101


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 93  LIKNAAETLQYYWPSQNYFANKCLKIQNT 179
           L K++   L  YWP  ++ ANK  +I N+
Sbjct: 274 LSKSSLYDLALYWPDNSFNANKYPQIFNS 302


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 98   YQPLIYYIFHVFTN 57
            Y PLI YIF++ TN
Sbjct: 977  YTPLIKYIFYILTN 990


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 63   ENMKNIID*WLIKNAAETLQYYWPSQNYFANKCLKIQNTTIQSV 194
            E +K  I+  LIKN  E L +  P       KC+  +N+ I  V
Sbjct: 1487 EALKAFIE--LIKNLFERLHFLLPKALNLLEKCICQENSMISKV 1528


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +3

Query: 117 LQYYWPSQNYFAN--KCLKIQNTTIQSVMSTTN 209
           L+YY+  Q       KCLK+ NTT    M   N
Sbjct: 444 LRYYFSLQRRLVRLRKCLKVSNTTELKSMKLIN 476


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 6/21 (28%), Positives = 16/21 (76%)
 Frame = +1

Query: 307 IWYSHYSLSTIFYEIL*ILHR 369
           +W S++ +  ++Y+++ IL+R
Sbjct: 375 LWLSNFDMENVYYKLIGILNR 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,784,740
Number of Sequences: 5004
Number of extensions: 35442
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)