Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B17
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1334 + 25864805-25865328,25865592-25865808                       28   3.1  
08_01_0685 + 6025975-6026074,6026168-6026357,6026963-6027034,602...    27   9.3  

>07_03_1334 + 25864805-25865328,25865592-25865808
          Length = 246

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 351 NFIKNSRQTVMAIPNWGTKNLLVSYIPFCDDH*NSN 244
           N I +    V+ +PN  +K L    IP+CD+H  +N
Sbjct: 48  NLIDDGCADVIPLPNVDSKTL-AKVIPYCDEHGRAN 82


>08_01_0685 +
           6025975-6026074,6026168-6026357,6026963-6027034,
           6027187-6027258,6027354-6027425,6027784-6027855,
           6027980-6028051,6028134-6028205,6028483-6028554,
           6028791-6028865,6028970-6029041,6029134-6029199,
           6029267-6029332,6029409-6029453,6029542-6029606,
           6029697-6030076,6030455-6030653,6030725-6030883,
           6030966-6031084,6031156-6031200,6031226-6031791,
           6031871-6032021,6032117-6032454,6033702-6033765,
           6034329-6034370,6035572-6035575,6035853-6036039,
           6037252-6037323,6037687-6037758,6037867-6037938,
           6038019-6038090,6038651-6038725,6038815-6038886,
           6038988-6039053,6039163-6039228,6039348-6039392,
           6039469-6039533,6039615-6039994,6040070-6040202,
           6040354-6040512,6040599-6040717,6040805-6041015,
           6041155-6041386,6041469-6041619,6041725-6042084
          Length = 1952

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 90  WLIKNAAETLQYYWPSQNYFANKCLKIQNTTIQSVMSTTNWLMSTRTYFG 239
           W + N  +  Q    S+  ++N+  KIQN  +  ++ T     S+  YFG
Sbjct: 436 WGVSNVGKYFQSPNDSKIIYSNE--KIQNAVVSELLQTARMSPSSLRYFG 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,015,698
Number of Sequences: 37544
Number of extensions: 172937
Number of successful extensions: 287
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)