Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B17
         (452 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AL032647-7|CAA21691.2|  360|Caenorhabditis elegans Hypothetical ...    27   6.4  
Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical
           protein F48F7.4 protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 90  INLLYFSCFHQ*TFVLKKKKKNCETSSPSC 1
           +NL +F C +  TF+L +  K   T  P+C
Sbjct: 156 LNLKHFKCLYTSTFLLFRCSKKLYTQYPAC 185


>AL032647-7|CAA21691.2|  360|Caenorhabditis elegans Hypothetical
           protein Y57A10B.4 protein.
          Length = 360

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 292 VFCAPIWYSHYSLSTIFYEIL*ILHR*GAL*HFREFHTSKSRHIP 426
           ++ A  +  HY  S IF  ++ I+ R  A  + +++   + RHIP
Sbjct: 126 LYVASCFMWHYIYSVIFAPVVVIVERGIATWYIQDYENVRRRHIP 170


>Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical
           protein ZK455.2 protein.
          Length = 1118

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 105 AAETLQYYWPSQN 143
           A ET+QYYWPS +
Sbjct: 457 AHETIQYYWPSDS 469


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,708,607
Number of Sequences: 27780
Number of extensions: 193508
Number of successful extensions: 492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)