Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B15
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   113   2e-26
SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    38   0.001
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    38   0.002
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    30   0.34 
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    26   4.2  
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    25   7.3  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    25   7.3  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    25   9.7  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    25   9.7  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  113 bits (272), Expect = 2e-26
 Identities = 48/90 (53%), Positives = 63/90 (70%)
 Frame = -1

Query: 369 IPYFVSGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 190
           +P  VSGKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG++DCYT +RGST TLGNF   
Sbjct: 153 VPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFVKA 212

Query: 189 XXXXXXXXXXYLTPDLWRDIPLTKSPYSDF 100
                      LTP+LW + P  ++P  ++
Sbjct: 213 AFAAASLTYGILTPNLWAERPFGQTPIEEY 242


>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 546 YKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVY 659
           ++R     H  T+++KIEG   + +A FY GKR  YVY
Sbjct: 17  FQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVY 54


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 546 YKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVY 659
           ++R     H  T+L+KIEG   + +A FY GKR  +VY
Sbjct: 17  FQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVY 54


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +1

Query: 130 DISPQVRCQICVSLGNGC---ICSFRKVAKS 213
           D   Q+ C++CV + NGC   IC F  V+ S
Sbjct: 68  DDQKQIFCKLCVDICNGCSTPICEFNAVSNS 98


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 502 TPSWQALRQSLYSQVTNVVC 561
           T SW+AL++++   VT+ VC
Sbjct: 61  TTSWEALKKAIDGDVTSAVC 80


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 281 TGADTIPVPRGAGINLTVTE 340
           TG   I +P+G G+ L++TE
Sbjct: 231 TGKSWISLPKGKGVKLSITE 250


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 281 TGADTIPVPRGAGINLTVTE 340
           TG   I +P+G G+ L++TE
Sbjct: 231 TGKSWISLPKGKGVKLSITE 250


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 485 RKVSSKPRHGRLYAKACIHRLQTWSAQP 568
           R  SS P   RL+  AC+H+  T  A P
Sbjct: 284 RLPSSFPEDLRLFVDACLHKDPTLRASP 311


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
 Frame = +1

Query: 163 VSLGNGCICSFRKVAKSASGSTSRSVAILNTSHLKQLLGNRGRHNSSTTGSG-DQSN 330
           + L  G    +    +S   S S S  ++N      L      HN STT  G D SN
Sbjct: 30  IDLEKGLPLKYNSENESGLPSNSASSYLINPDPTMDLEAQTFNHNESTTSVGHDNSN 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,536
Number of Sequences: 5004
Number of extensions: 41337
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)