Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_B15
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 113 9e-26
07_01_0756 + 5819367-5820038,5820847-5821005 110 1e-24
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 65 4e-11
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 52 5e-07
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 52 5e-07
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 50 2e-06
09_04_0226 - 15859439-15860377 32 0.35
01_05_0739 + 24807181-24809121 30 1.4
06_03_0267 + 18970578-18972464 28 7.6
04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163 28 7.6
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 113 bits (273), Expect = 9e-26
Identities = 50/90 (55%), Positives = 65/90 (72%)
Frame = -1
Query: 369 IPYFVSGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 190
+P V+GKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST TLGNF
Sbjct: 163 VPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKA 222
Query: 189 XXXXXXXXXXYLTPDLWRDIPLTKSPYSDF 100
+LTPD WRD KSP+ ++
Sbjct: 223 TFDCLMKTYGFLTPDFWRDTKFVKSPFQEY 252
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 110 bits (264), Expect = 1e-24
Identities = 48/90 (53%), Positives = 65/90 (72%)
Frame = -1
Query: 369 IPYFVSGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 190
+P V+GKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG++D +TS+RGST TLGNF
Sbjct: 166 VPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKTLGNFVKA 225
Query: 189 XXXXXXXXXXYLTPDLWRDIPLTKSPYSDF 100
+LTPD WR+ K+P+ ++
Sbjct: 226 TFDCLMKTYGFLTPDFWRETRFIKTPFQEY 255
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 65.3 bits (152), Expect = 4e-11
Identities = 29/53 (54%), Positives = 41/53 (77%)
Frame = -1
Query: 357 VSGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 199
V+ K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+RGST TL NF
Sbjct: 55 VADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSNF 107
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = +3
Query: 543 GYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVY 659
GYKR NQ+ENT+LL+IEG + + +YAGKR YVY
Sbjct: 19 GYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVY 57
>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
Length = 111
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = +3
Query: 543 GYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVY 659
GYKR NQ+ENT+LL+IEG + + +YAGKR YVY
Sbjct: 19 GYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVY 57
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +3
Query: 543 GYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVY 659
GYKR NQ+ENT+L++IEG + + +Y GKR YVY
Sbjct: 20 GYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGKRMAYVY 58
>09_04_0226 - 15859439-15860377
Length = 312
Score = 32.3 bits (70), Expect = 0.35
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 319 PRSPWYWNCVCPCSQEVASNGWCSGLLHFCSW--IHW 215
PR Y+ C+ PC SN + SG+ + SW + W
Sbjct: 187 PRRDLYYGCMVPCDYVRGSNEYMSGMGYLLSWDLVEW 223
>01_05_0739 + 24807181-24809121
Length = 646
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 136 SPQVRCQICVSLGNGCICSFRKVAKSASGST 228
S + R + CV G G C F AKSA GST
Sbjct: 474 SARGRTEYCVRHGGGKRCKFEGCAKSAQGST 504
>06_03_0267 + 18970578-18972464
Length = 628
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 136 SPQVRCQICVSLGNGCICSFRKVAKSASGST 228
S + R CV G G C F +KSA GST
Sbjct: 457 SARGRTDCCVRHGGGKRCQFTGCSKSAQGST 487
>04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163
Length = 723
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 136 SPQVRCQICVSLGNGCICSFRKVAKSASGST 228
S + + +C+S G G C F +K A GST
Sbjct: 439 SAEGKAGLCISHGGGRRCQFPDCSKGAQGST 469
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,589,745
Number of Sequences: 37544
Number of extensions: 296811
Number of successful extensions: 804
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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