Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_B15
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 124 7e-29
U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal prote... 66 3e-11
Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z49126-7|CAD56566.1| 392|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z49126-6|CAA88942.2| 530|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z49066-3|CAD56555.1| 392|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z49066-2|CAD56554.1| 530|Caenorhabditis elegans Hypothetical pr... 30 1.7
U39674-7|AAA80417.1| 91|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z69788-8|CAA93644.3| 483|Caenorhabditis elegans Hypothetical pr... 27 8.9
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 124 bits (298), Expect = 7e-29
Identities = 57/87 (65%), Positives = 65/87 (74%)
Frame = -1
Query: 369 IPYFVSGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNFXXX 190
+P V+GKC SV VRLIPAPRGTGIVSAPVPKKLL MAG++DCYT+A+GST TLGNF
Sbjct: 176 VPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKA 235
Query: 189 XXXXXXXXXXYLTPDLWRDIPLTKSPY 109
YLTPDLW++ L KSPY
Sbjct: 236 TYAALQRTYSYLTPDLWKEEALEKSPY 262
>U41264-2|AAA82422.1| 124|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 33 protein.
Length = 124
Score = 65.7 bits (153), Expect = 3e-11
Identities = 30/55 (54%), Positives = 38/55 (69%)
Frame = +3
Query: 495 PRNPVMAGSTPKLVFTGYKRGLRNQHENTALLKIEGTKDRSDALFYAGKRCVYVY 659
P P K +FTG+KRGLR Q E+T+LLK+EG ++ DA FYAGKR VY+Y
Sbjct: 10 PSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLY 64
>Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 348 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 217
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 348 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 217
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z49126-7|CAD56566.1| 392|Caenorhabditis elegans Hypothetical
protein DH11.5b protein.
Length = 392
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 193 FRKVAKSASGSTSRSVAILNTSHLKQLLGNRGRHNSSTTGSGDQSNCD*TTLS*NKIRN 369
F A S+S +T+ + ++ + HL L + HN TTG+ D T + ++ +N
Sbjct: 49 FTVTATSSSTTTTTTNSLSSNHHLPLHLHHHHHHNGMTTGTSSMGQIDGTGSTGSRAKN 107
>Z49126-6|CAA88942.2| 530|Caenorhabditis elegans Hypothetical
protein DH11.5a protein.
Length = 530
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 193 FRKVAKSASGSTSRSVAILNTSHLKQLLGNRGRHNSSTTGSGDQSNCD*TTLS*NKIRN 369
F A S+S +T+ + ++ + HL L + HN TTG+ D T + ++ +N
Sbjct: 49 FTVTATSSSTTTTTTNSLSSNHHLPLHLHHHHHHNGMTTGTSSMGQIDGTGSTGSRAKN 107
>Z49066-3|CAD56555.1| 392|Caenorhabditis elegans Hypothetical
protein DH11.5b protein.
Length = 392
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 193 FRKVAKSASGSTSRSVAILNTSHLKQLLGNRGRHNSSTTGSGDQSNCD*TTLS*NKIRN 369
F A S+S +T+ + ++ + HL L + HN TTG+ D T + ++ +N
Sbjct: 49 FTVTATSSSTTTTTTNSLSSNHHLPLHLHHHHHHNGMTTGTSSMGQIDGTGSTGSRAKN 107
>Z49066-2|CAD56554.1| 530|Caenorhabditis elegans Hypothetical
protein DH11.5a protein.
Length = 530
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 193 FRKVAKSASGSTSRSVAILNTSHLKQLLGNRGRHNSSTTGSGDQSNCD*TTLS*NKIRN 369
F A S+S +T+ + ++ + HL L + HN TTG+ D T + ++ +N
Sbjct: 49 FTVTATSSSTTTTTTNSLSSNHHLPLHLHHHHHHNGMTTGTSSMGQIDGTGSTGSRAKN 107
>U39674-7|AAA80417.1| 91|Caenorhabditis elegans Hypothetical
protein C06E2.2 protein.
Length = 91
Score = 29.5 bits (63), Expect = 2.2
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = -1
Query: 597 QSLTKLYFHVGCADHVCNL 541
++LTKL+FH+ CAD++ +
Sbjct: 49 ETLTKLFFHLACADNIIKI 67
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 198 QSCQECQWIHEQKCSNPEHQPFEATSWEQGQTQFQ 302
Q Q+ Q +Q+ NP+ QP + T + Q Q Q Q
Sbjct: 299 QQQQQQQQQQQQRQQNPQQQPQQTTQFGQSQIQLQ 333
>Z69788-8|CAA93644.3| 483|Caenorhabditis elegans Hypothetical
protein F09A5.1 protein.
Length = 483
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 126 VGYLSTSQVSNMRKSWQW 179
+GY+ +S VS++ SWQW
Sbjct: 150 LGYIISSNVSSLTGSWQW 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,133,219
Number of Sequences: 27780
Number of extensions: 252739
Number of successful extensions: 702
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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