Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B14
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.2  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.1  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    21   6.8  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 530 PRNNGMRAKIFSLAIARRGRSCLIFFF 450
           P+N      +++LA  R G + L+F F
Sbjct: 29  PQNRSQEEDLWNLATDRAGLAILLFLF 55


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 353 ESTNLDSTCASLAFGSSDSGSKARA 279
           +S N   TC   A  S+  GS++R+
Sbjct: 199 KSENETKTCKKYAISSNSLGSRSRS 223


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 299 CPMSRKRERHRWSQD 343
           CP+ + +ER  W  D
Sbjct: 103 CPLEKLKERRIWRDD 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.133    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,821
Number of Sequences: 438
Number of extensions: 3303
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)