Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B11
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   5.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.8  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 83  YPITRRSRYS*ISVVEVRRESFSDRRV 163
           Y  TRR RY+ + +V  + +++ D RV
Sbjct: 135 YRRTRRDRYTNLGLVNEQGQTWHDLRV 161


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 374 SGLSNRYGLLLHCLVYG 324
           +GL + YG LLH L  G
Sbjct: 398 AGLLSAYGELLHALTSG 414


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 133 NFNN*DLAVPGSPSNRILISPRRVKPSGNLF 41
           NFN  +  +  +P N+++   R   P  N F
Sbjct: 389 NFNEVNFRILNAPVNQLIRYTRCENPKTNFF 419


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 193 PAALEPFPEVYTPIGETFSTNFNN*DLAVP 104
           P   EP+P+++  I     T F   +L VP
Sbjct: 216 PCCDEPYPDIFFNITLRRKTLFYTVNLIVP 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,246
Number of Sequences: 438
Number of extensions: 2960
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)