Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_B10
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 29 0.27
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.47
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 1.1
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.1
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 1.4
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 27 1.4
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 27 1.9
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 3.3
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 26 3.3
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 25 4.4
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 4.4
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 25 4.4
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 25 7.7
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 25 7.7
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 7.7
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 25 7.7
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 29.5 bits (63), Expect = 0.27
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 356 MPGMRPLFPAASVPTSNPSKPTFPAYSNATISAP 457
+P M+P P +S+P S+PT A SN+ S P
Sbjct: 6 LPSMQPT-PTSSIPLRQMSQPTTSAPSNSASSTP 38
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 0.47
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 380 PAASVPT-SNPSKPTFPAYSNATISAPPTT 466
P VP+ S P+ P P SN T+S+PP +
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPPNS 270
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1583 PSYSPTSPSYS-PTSPSYSPTSPSYSATSPSYSPTS 1617
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1611 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1645
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1618 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1652
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1625 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1659
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1632 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1666
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1639 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1673
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1646 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1680
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1653 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1687
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1660 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1694
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1667 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1701
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1674 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1708
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1681 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1715
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1688 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1722
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1695 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1729
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1702 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1736
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1709 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1743
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1716 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1750
Score = 27.1 bits (57), Expect = 1.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1569 PAYMPSSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1603
Score = 24.6 bits (51), Expect = 7.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S TS PT P+YS + S PT+
Sbjct: 1597 PSYSPTSPSYSA-TSPSYSPTSPSYSPTSPSYSPTS 1631
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 196 KEKSNPSTIRSWTFNSNTRYPTHTHGAGASRDVSRAYAHES 318
KEK NP+ +T P H + D S ++AH++
Sbjct: 449 KEKKNPNVTHEEFVEKSTALPRHINKVEIVSDSSESFAHKN 489
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 1.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 2 HEAIHCMQVHKEAVDKVPNSLPNRSNIEI 88
H +H +Q +K K+P SLP+ S + +
Sbjct: 137 HRRLHYLQDNKIRPSKIPKSLPSNSPVRL 165
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 27.1 bits (57), Expect = 1.4
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -2
Query: 379 EQRPHSGHHHPRCLHKWRHHMIHGHMPWIH 290
+++PH HH + LH R H H H
Sbjct: 107 DEKPHVWHHEGKSLHPERQTSSHPHQVTAH 136
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.6 bits (56), Expect = 1.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 395 PTSNPSKPTFPAYSNATISAPP 460
P+S ++P P+Y+ T S PP
Sbjct: 66 PSSKATRPYIPSYTRLTYSVPP 87
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 3.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 338 QAPRMMMPGMRPLFPAASVPTSNPSKPTFPA 430
+ P P PL P+ S+ SNP +FP+
Sbjct: 192 EPPTSSFPIQPPLPPSRSISISNPQSLSFPS 222
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 25.8 bits (54), Expect = 3.3
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 365 MRPLFPAASVPTSNPSKPTFPAYSNATI 448
+ P P + +PS PT P+ SN T+
Sbjct: 88 LHPTPPYTNFDDESPSSPTHPSVSNITV 115
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 4.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 14 HCMQVHKEAVDKVPNSLPNRSN 79
H VHKE+V K+ +L +R+N
Sbjct: 119 HKTDVHKESVSKLSKNLESRNN 140
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
PG PLF A T+ P FP +++ + P T
Sbjct: 41 PGNAPLFTQAPPHTNPQGPPPFPLFNSISPVYDPAT 76
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 4.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -2
Query: 367 HSGHHHPRCLHKWRHHMIHGH 305
H GHHH H HH H H
Sbjct: 296 HEGHHH----HHHHHHHHHSH 312
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 24.6 bits (51), Expect = 7.7
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +1
Query: 220 IRSWTFNSNTRYPT--HTHGAGASRDVSRAYAHESYD--ASIY 336
IR FN RYPT H +GA S V+ Y + + AS+Y
Sbjct: 621 IRPPNFNPRKRYPTVFHLYGAPQSALVTGKYEMDINELMASVY 663
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 24.6 bits (51), Expect = 7.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 300 PGYIPGGTGPMGVGR 256
P YIPG T P+ +GR
Sbjct: 128 PKYIPGWTNPICIGR 142
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 24.6 bits (51), Expect = 7.7
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 205 SNPSTIRSWTFNSNTRYPTHTHGAGASRDVSRAYAHESYDASIYAGT*DDDARN 366
S T+R WT+N T T+T+ + + + S + IY G D R+
Sbjct: 255 SEDLTLRLWTWNDKTLTNTYTYTGHRGKHI-WSLVVSSANPIIYTGGNDGSVRS 307
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 24.6 bits (51), Expect = 7.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 374 LFPAASVPTSNPSKPTFPAYSNATIS 451
++P A+ ++ P PT PAY N I+
Sbjct: 903 IYPLAAAISTIPGLPTKPAYYNIDIA 928
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,740,750
Number of Sequences: 5004
Number of extensions: 31164
Number of successful extensions: 159
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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