Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_B10
(470 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 60 6e-10
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 60 6e-10
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 33 0.14
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 29 1.7
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 29 1.7
AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical ... 29 2.2
U70845-2|AAB09100.1| 102|Caenorhabditis elegans Hypothetical pr... 28 2.9
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 28 2.9
U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical pr... 28 3.9
AL132898-20|CAC14415.2| 243|Caenorhabditis elegans Hypothetical... 28 3.9
AF016439-5|AAB65900.1| 630|Caenorhabditis elegans Hypothetical ... 28 3.9
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 28 3.9
Z95310-2|CAB08563.1| 394|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z83104-6|CAB05479.1| 394|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical pr... 27 9.0
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 27 9.0
U00055-6|AAA50724.1| 494|Caenorhabditis elegans Hypothetical pr... 27 9.0
AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein... 27 9.0
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 60.5 bits (140), Expect = 6e-10
Identities = 23/36 (63%), Positives = 30/36 (83%)
Frame = +2
Query: 8 AIHCMQVHKEAVDKVPNSLPNRSNIEIEIYGMEGIP 115
+IHCMQVHKE +DK+P ++ R NI +EIYGM+GIP
Sbjct: 51 SIHCMQVHKETIDKIPAAVHGRDNIHVEIYGMQGIP 86
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 60.5 bits (140), Expect = 6e-10
Identities = 23/36 (63%), Positives = 30/36 (83%)
Frame = +2
Query: 8 AIHCMQVHKEAVDKVPNSLPNRSNIEIEIYGMEGIP 115
+IHCMQVHKE +DK+P ++ R NI +EIYGM+GIP
Sbjct: 51 SIHCMQVHKETIDKIPAAVHGRDNIHVEIYGMQGIP 86
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 32.7 bits (71), Expect = 0.14
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = -2
Query: 400 GRHTRRWEQRPHSGHHHPRCLHKWRHHMIHGHMPWIHPGRHRPHG 266
G H H G HH H HH H H P H G H HG
Sbjct: 482 GHHGEHGTHHGHHGSHHSPAHH--GHHGEHHHAP-AHHGHHGEHG 523
Score = 32.7 bits (71), Expect = 0.14
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = -2
Query: 400 GRHTRRWEQRPHSGHHHPRCLHKWRHHMIHGHMPWIHPGRHRPHG 266
G H H GHH H HH H H P H G H HG
Sbjct: 504 GHHGEHHHAPAHHGHHGEHGTHH-GHHGEHHHAP-AHHGHHGEHG 546
Score = 32.3 bits (70), Expect = 0.18
Identities = 17/45 (37%), Positives = 17/45 (37%)
Frame = -2
Query: 400 GRHTRRWEQRPHSGHHHPRCLHKWRHHMIHGHMPWIHPGRHRPHG 266
G H H G HH H HH H H P H G H HG
Sbjct: 540 GHHGEHGTHHGHHGSHHSPAHH--GHHGEHHHAP-AHHGHHGHHG 581
Score = 31.1 bits (67), Expect = 0.42
Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -2
Query: 367 HSGHHHPRCLHKWRHHMIHGH--MPWIHPGRHRPHGCG 260
H G HH H HH HGH +H G H HG G
Sbjct: 563 HHGEHH----HAPAHHGHHGHHGSHGVHHGHHESHGHG 596
Score = 30.7 bits (66), Expect = 0.55
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -2
Query: 367 HSGHHHPRCLHKWRHHMIHGHMPWIHPGRHRPHG 266
H HHH H HH H H P H G H HG
Sbjct: 458 HGEHHHAPAHH--GHHGEHHHAP-AHHGHHGEHG 488
Score = 30.7 bits (66), Expect = 0.55
Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Frame = -2
Query: 418 GFARVRGRHTRRWEQRPHSGHH-HPRCLHKWRHHMIHGHMPWIHPGRHRPHGCG 260
G+ G H PH HH H H H + HGH H H H G
Sbjct: 619 GYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGG 672
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = -2
Query: 367 HSGHHHPRCLHKWRHHMIHGHMPWIHPGRHRPH 269
H HHH H HGH H G H H
Sbjct: 429 HGEHHHAPAHHGHHESHGHGHHSPAHHGHHGEH 461
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Frame = -2
Query: 400 GRHTRRWEQRPHSGHHHPRCLH--KWRHHMI--HGHMPWIHPGRHRPHG 266
G H H GHH H HH HGH H G H HG
Sbjct: 562 GHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHG 610
Score = 27.9 bits (59), Expect = 3.9
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = -2
Query: 409 RVRGRHTRRWEQRPHSGHHHPRCLHKWRHHMIHGHMPWIHPGRHRPHGCG 260
R G H H G H H HH H P H G H HG G
Sbjct: 404 RHHGEHHGTHHSPAHHGEHGTHHGHHGEHH----HAP-AHHGHHESHGHG 448
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Frame = -2
Query: 379 EQRPHSGHHHPRCLHKWRHHMIHG-HMPWIHPGRHRPH 269
E H+ HH +H H HG H H G H H
Sbjct: 388 EHHEHAAHHDEHGVHHRHHGEHHGTHHSPAHHGEHGTH 425
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -2
Query: 400 GRHTRRWEQRPHSGHHHPRCLHKWRHHMIHGHMPWIHPGRHRPH 269
G H H GHH H HH H H P H G H H
Sbjct: 469 GHHGEHHHAPAHHGHHGEHGTHH-GHHGSH-HSP-AHHGHHGEH 509
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -2
Query: 400 GRHTRRWEQRPHSGHHHPRCLHKWRHHMIHGHMPWIHPGRHRPH 269
G H H GHH H HH H H P H G H H
Sbjct: 527 GHHGEHHHAPAHHGHHGEHGTHH-GHHGSH-HSP-AHHGHHGEH 567
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 341 APRMMMPGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
+P G P+ P+ S PTS PT P+YS + S PT+
Sbjct: 1597 SPTSPAAGQSPVSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1637
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1610 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1644
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1617 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1651
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 341 APRMMMPGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
+P G P+ P+ S PTS PT P+YS + S PT+
Sbjct: 1604 SPTSPAAGQSPVSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1644
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1617 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1651
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTT 466
P P P+ S PTS PT P+YS + S PT+
Sbjct: 1624 PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTS 1658
>AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical
protein Y119D3B.12a protein.
Length = 339
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -2
Query: 409 RVRGRHTRRWEQRPHSGHHHPRCLHKWRHHMIHGHMPWIHPGRHRPH 269
R R R T R R S H R H H H H G HR H
Sbjct: 262 RSRSRSTDRGADRKRSTEQHHHSHRSSRDHRDHRHRD--HRGEHREH 306
>U70845-2|AAB09100.1| 102|Caenorhabditis elegans Hypothetical
protein F22H10.2 protein.
Length = 102
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = -2
Query: 394 HTRRWEQRPHSGHHHPRCLHKWRHHMIHGHMPWIHPGRH 278
H H HHH LH H + GH H G H
Sbjct: 52 HNNGGHHHGHHHHHHHGLLHGLGHALTGGHHHHHHHGGH 90
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 353 MMPGMRPLFPAASVPTSNPS-KPTFPAYSNATISAPPTTS 469
M G P P S+P NP P+ P+ S +APP+ S
Sbjct: 570 MPSGESPAQPEPSIPAVNPEPSPSQPSSSGPIQTAPPSPS 609
>U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical
protein ZK154.5 protein.
Length = 1105
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 398 TSNPSKPTFPAYSNATISAPPTTS 469
TS+ S P F N TI+ PP+TS
Sbjct: 260 TSSSSNPKFVQLMNRTIAVPPSTS 283
>AL132898-20|CAC14415.2| 243|Caenorhabditis elegans Hypothetical
protein Y59A8B.19 protein.
Length = 243
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 426 GKVGLLGFEVGTLAAGNSGLIPGIIILGACINGGII*FMGICPGYIPGGTGPMG 265
G G+LG G A G G + G++ + G + G+ G G TG +G
Sbjct: 175 GLTGILGGGTGAEATGGLGAVTGVV---DGVTGTVGDLTGVLGGATGGATGALG 225
>AF016439-5|AAB65900.1| 630|Caenorhabditis elegans Hypothetical
protein R02F11.4 protein.
Length = 630
Score = 27.9 bits (59), Expect = 3.9
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Frame = +1
Query: 199 EKSNPSTIRSWTFNSNTRYPTHTHGAGASRDVSRAYAHESYDASIYAGT*DDDARNEAA- 375
E T + S RYP + G++R +S S + D R+E+
Sbjct: 398 EARKNKTFKFQNETSPNRYPENFRPLGSTRSISTETVICSSRTEVSFTV---DGRSESTP 454
Query: 376 VPSGECADLE-----PEQTHLPSI 432
+P +CA LE PEQ H PS+
Sbjct: 455 LPRIDCAPLERKEQEPEQRHTPSV 478
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 386 ASVPTSNP-SKPTFPAYSNATISAPPTTS 469
AS + P S T Y NATISA PTTS
Sbjct: 21 ASSNSEEPASSQTHVGYDNATISAGPTTS 49
>Z95310-2|CAB08563.1| 394|Caenorhabditis elegans Hypothetical
protein F09B12.5 protein.
Length = 394
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 338 QAPRMMMPGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTTS 469
Q+P + +P P TS SKPTFP+ A + TTS
Sbjct: 260 QSPALTSSSAKPTKPPT---TSETSKPTFPSTLPAYVLPMTTTS 300
>Z83104-6|CAB05479.1| 394|Caenorhabditis elegans Hypothetical
protein F09B12.5 protein.
Length = 394
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 338 QAPRMMMPGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPTTS 469
Q+P + +P P TS SKPTFP+ A + TTS
Sbjct: 260 QSPALTSSSAKPTKPPT---TSETSKPTFPSTLPAYVLPMTTTS 300
>Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 344 PRMM-MPGMRPLFPAASVPTSNPSKPTFPAYSNA 442
PRMM MP P +P A++P P P+Y N+
Sbjct: 334 PRMMTMPPNMP-YPTATLPHPRTWAPQIPSYPNS 366
>Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical
protein C33G3.1a protein.
Length = 793
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 344 PRMM-MPGMRPLFPAASVPTSNPSKPTFPAYSNA 442
PRMM MP P +P A++P P P+Y N+
Sbjct: 240 PRMMTMPPNMP-YPTATLPHPRTWAPQIPSYPNS 272
>Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 344 PRMM-MPGMRPLFPAASVPTSNPSKPTFPAYSNA 442
PRMM MP P +P A++P P P+Y N+
Sbjct: 334 PRMMTMPPNMP-YPTATLPHPRTWAPQIPSYPNS 366
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 359 PGMRPLFPAASVPTSNPSKPTFPAYSNATISAPPT 463
P + P+ +SVP P P P IS PPT
Sbjct: 500 PPLPPIATPSSVPPPPPPPPPPPPALEQEISGPPT 534
>U00055-6|AAA50724.1| 494|Caenorhabditis elegans Hypothetical
protein R02F2.8 protein.
Length = 494
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 456 GALIVALLYAGKVGLLGFEVGTLAAGNSGLIPGIIILGAC 337
G +I A+ G+ G + A + GLIPG+I+L C
Sbjct: 25 GWIIGAIFIIGETAGGGMIALSYALTSMGLIPGLILLSLC 64
>AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein
protein.
Length = 793
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 344 PRMM-MPGMRPLFPAASVPTSNPSKPTFPAYSNA 442
PRMM MP P +P A++P P P+Y N+
Sbjct: 240 PRMMTMPPNMP-YPTATLPHPRTWAPQIPSYPNS 272
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,877,915
Number of Sequences: 27780
Number of extensions: 189350
Number of successful extensions: 912
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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