Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B09
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   5.4  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   7.2  
SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III sub...    24   9.5  

>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = -2

Query: 141 CNTIVLFI----IVYYYTAKLSIDECNNVIR*VHLYSIFLFGFINSFLTS 4
           C  + +FI    ++ ++ + L + +CN+ I+   ++ +FLF      +TS
Sbjct: 173 CMALTVFINPNALLLFFPSYLILRKCNSSIKFRQIFVVFLFYLAGLIITS 222


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 188 QLLADIVNNKQMLTFQRCFCRHNVLYP 268
           +L AD+  + QML   +    HN  YP
Sbjct: 228 KLFADLTVSDQMLFLNQLLLEHNTKYP 254


>SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III
           subunit Rpb8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 125

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 400 YSLALDTTFSLLITRHS*PRDLKE 329
           Y L  D TFSL IT +    DLKE
Sbjct: 47  YPLEKDATFSLQITSNLNSPDLKE 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,524,216
Number of Sequences: 5004
Number of extensions: 25394
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)