Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B09
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132943-4|CAB81975.1|  690|Caenorhabditis elegans Hypothetical ...    27   6.4  
AF014939-7|AAB63929.2|  343|Caenorhabditis elegans Serpentine re...    27   8.4  

>AL132943-4|CAB81975.1|  690|Caenorhabditis elegans Hypothetical
           protein Y116F11B.7 protein.
          Length = 690

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 117 IVYYYTAKLSIDECNNVIR*VHLYSI 40
           I+Y Y   L+IDECN  +    L S+
Sbjct: 186 IIYNYAQDLTIDECNTFVNNFRLSSL 211


>AF014939-7|AAB63929.2|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein192 protein.
          Length = 343

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 67  YIITLINT*FSSIIIYYNE*YNSVTVDNYIC 159
           +I TLI   F+ +I YYN+  N+ T+  + C
Sbjct: 258 FIFTLIYIGFAYLINYYNQGLNNATLAIFSC 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,187,105
Number of Sequences: 27780
Number of extensions: 135087
Number of successful extensions: 212
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)