Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B09
         (454 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   0.89 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   3.6  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   4.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   4.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   6.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.3  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 0.89
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 36  KI*NKDVPT*LHYYTHQYLI*QYN 107
           +I NKD    L YY HQ ++ +YN
Sbjct: 223 RIVNKDRRGELFYYMHQQIMARYN 246


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 141 CNTIVLFIIVYYY 103
           C   VLF+ +YYY
Sbjct: 9   CGIAVLFLALYYY 21


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 22  NETKQKYRIKMYLPNYIITL 81
           N     Y  K+Y  NYII +
Sbjct: 105 NYNNNNYNKKLYYKNYIINI 124


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 22  NETKQKYRIKMYLPNYIITL 81
           N     Y  K+Y  NYII +
Sbjct: 335 NNNYNNYNKKLYYKNYIINI 354


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic
          acetylcholine receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 13 KGINETKQKYRIKMYL 60
          K I  T   YR+K+YL
Sbjct: 29 KDITSTSALYRLKLYL 44


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 162 IKSNCNLSFNYLLT 203
           +  +CN SFN LLT
Sbjct: 529 VTEDCNKSFNDLLT 542


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 14  KELMKPNKNIE*RCTYL 64
           +E+  PN NI   C YL
Sbjct: 113 EEMWNPNTNISEDCLYL 129


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 14  KELMKPNKNIE*RCTYL 64
           +E+  PN NI   C YL
Sbjct: 113 EEMWNPNTNISEDCLYL 129


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 117 IVYYYTAKLSIDECN 73
           IVY++   LSID  N
Sbjct: 31  IVYFHVTVLSIDSIN 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,035
Number of Sequences: 438
Number of extensions: 1773
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)