Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_B08
(535 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 28 0.76
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 28 1.0
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 27 1.8
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 27 2.3
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 3.1
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 3.1
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce... 26 3.1
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 26 4.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.1
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 7.1
SPAC1296.02 |cox4||cytochrome c oxidase subunit IV|Schizosacchar... 25 7.1
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 25 7.1
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 25 9.4
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 25 9.4
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 25 9.4
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 28.3 bits (60), Expect = 0.76
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 230 ISEVEVSGQRSSTLARQYGGYPERYTNGRGKHLVEELP 117
+ E+ + S L + YPER+TN + L+E LP
Sbjct: 332 VKELSIDAFGSHVLQKSLEIYPERFTNNLIEELIECLP 369
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -1
Query: 385 QSCFIIIFIVINSGSNYMK-YLIR*LCTFC 299
++ F ++ I+ + SNY++ YL+R LCT C
Sbjct: 596 RAVFELLEIIQMASSNYLRLYLLRGLCTLC 625
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 27.1 bits (57), Expect = 1.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 411 WS*EHTLYSACWP*TVRIWRGKN*NCYRNLR 503
W ++ +YS+ + T+RIW K+ C L+
Sbjct: 277 WGGQNWIYSSSYDKTIRIWDAKDGKCLHILK 307
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 227 KSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNY 373
KS+ G++ P +VA + R +E E F + YY +NY
Sbjct: 1202 KSIFTESMAGSSLPVVVAHGEGRAVFDSESDYEQFKKEGLDLIYYVNNY 1250
>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 347 TIYYYEDNYEAALKIFHDIELVELRAYSIQCLLAMNR 457
T+YYY A +F D+ + E S+ CL + R
Sbjct: 26 TLYYYYFVSHLAAALFVDLPITEWLGGSLSCLSGLRR 62
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -3
Query: 230 ISEVEVSGQRSSTLARQYGGYPERYTNGRGK--HLVEELP 117
+ EV RSS LA + GYP YT + H + ELP
Sbjct: 373 VIEVNARLSRSSALASKATGYPLAYTAAKIALGHTLPELP 412
>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 26.2 bits (55), Expect = 3.1
Identities = 35/170 (20%), Positives = 70/170 (41%)
Frame = +2
Query: 26 DELFDVRNAFYVGNYQQAINEAQRINPSSPLVALQRDVFLYRSYIAQGNHRIVLQELKTA 205
+EL+ VR FY GNY + + E + S + L ++++ R+ +A G +Q + T
Sbjct: 10 NELYFVRQYFYSGNYTK-LFEIDTTSMSEKGLEL-TEIYMARAKLALGESLESIQSILTQ 67
Query: 206 DPILQPLKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAAL 385
P + + L+ G ++ D + +F + + ++D +
Sbjct: 68 K---TPGSAAILALA-GEGNMELIIDQHGNSDSVVQTLGAIFQIKNGS---FDDAMDLLK 120
Query: 386 KIFHDIELVELRAYSIQCLLAMNRPDLARXXXXXXXXXXDDGTLTQLAQA 535
K ++E V L+ Y L ++ + A D+ + QLAQ+
Sbjct: 121 KSVENLEAVALQVY---IHLREHKIEAAEQTLKQALDWADEEIVLQLAQS 167
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/60 (21%), Positives = 25/60 (41%)
Frame = +2
Query: 224 LKSLVDYLSPGANKPAIVADIDARVAKGTELSNEVFHVVAATIYYYEDNYEAALKIFHDI 403
L + +YL KP + A + + + E V ++ Y D + A+K+F +
Sbjct: 443 LGKIAEYLDASVRKPVLAAALSRSLKDPFVPAREAALKVLLSVQNYFDTKDVAIKLFPSV 502
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 125 LQRDVFLYRSYIAQGNHRIVLQELKTA 205
++R FLY ++ +H ++ QEL+ A
Sbjct: 346 IKRVAFLYHKFMIPSDHVVISQELQDA 372
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.0 bits (52), Expect = 7.1
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Frame = +2
Query: 107 SSPLVALQRDVFLYRSYIAQGN--HRIVLQELKTADPILQPLKSLVDYLSPGANKPAIVA 280
SS L+ L R FL R+Y N H+++ + + PLK L + + +P +
Sbjct: 420 SSSLLILGRYPFLLRAYPELSNLYHKLLHISISSIYANYSPLKLLPNDVRERLKQPKFIP 479
Query: 281 DIDARVAKGT----ELSNEVFHV---------VAATIYYYEDNYEAALKIFHDI 403
+ D+R+ + T + N VF + + ++YY +NY+ + I ++
Sbjct: 480 E-DSRLREITLRPPKEKNLVFSLDPFADRFNKTESEVFYYFENYDEDIPILRNL 532
>SPAC1296.02 |cox4||cytochrome c oxidase subunit
IV|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +2
Query: 122 ALQRDVFLYRSYIAQGNHRIVLQELKTADPILQPLKSLVDYLSPGANKPAIVADID 289
A++ V LYR +++ R +K A L K D + PG + D++
Sbjct: 15 AVRSTVSLYRGFVSASIRRNEQNVVKAAAQELANAKEPSDLIGPGGRDGEVPTDLE 70
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 413 PLIQYRGKFSKLLHNYLHSN 354
PLI + K + L H YLH+N
Sbjct: 113 PLIDFLSKHTPLEHLYLHNN 132
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +2
Query: 311 ELSNEVFHVVAATIYYYEDNYEAALKI 391
E+ ++ H+ + YY NY+ LK+
Sbjct: 484 EVCTDIIHLYHQKLDYYSGNYDTFLKV 510
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 460 RTVHGQQALYRVCSQLH*FNIVENFQSCFI 371
+ + GQ+ +Y L +I+E F SCFI
Sbjct: 75 KNLSGQEDVYESTGPLLVKSILEGFNSCFI 104
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 133 SLKSYQGR*RINALCLVNSLLVI 65
SL S+ + ++NALCL S L++
Sbjct: 192 SLFSFSSKSQLNALCLYQSKLIV 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,071,905
Number of Sequences: 5004
Number of extensions: 43385
Number of successful extensions: 122
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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