Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_B07
(568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 192 4e-50
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 29 0.63
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 27 1.9
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 1.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.9
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 2.5
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 3.4
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 5.9
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 7.7
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 192 bits (467), Expect = 4e-50
Identities = 94/181 (51%), Positives = 130/181 (71%), Gaps = 2/181 (1%)
Frame = +3
Query: 30 KILKAGAIEPDTFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 203
KI+K + +P + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 204 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 383
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123
Query: 384 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHNVDTFQSVYKKLTGREV 563
++AILED+VFP EI+GKR R DG + IKV LD T+++ + +F SVY KLTG+ V
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNV 183
Query: 564 T 566
T
Sbjct: 184 T 184
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 28.7 bits (61), Expect = 0.63
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +3
Query: 279 HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 458
H V V D+ + P N+Q R +L+ + D + + V E V R K G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650
Query: 459 SQLIKVHLD-KNQQTTIEHNV 518
S ++ LD K+ Q EH +
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +3
Query: 60 DTFETSISQALVELETNSDLKAQLRELYITKAKEIEL 170
+T+E I + L++L + S++ Q+ ++I E+E+
Sbjct: 78 ETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEV 114
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 366 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHNVDTF 527
++L + YD + EDL ++ +GK+ ++ ++L VHL + TIE + F
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKF 615
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +3
Query: 36 LKAGA-IEPDTFETSISQALVE--LETNSDLKAQLRELY 143
+KA A I+PD FE +I Q L + N LK ++ +LY
Sbjct: 2123 VKANAFIDPDNFEVNIEQTLSKNFFGNNQYLKLKIMQLY 2161
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 192 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 284
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -3
Query: 476 HFDEL*AIELHSDA--FANN--LGREYQIFQYGVIYRSQCPGTGPFLFV 342
H D + ++ +DA F+N+ + + + G+IYRS CP F F+
Sbjct: 36 HKDGIKVVDTSNDASTFSNSPLVPDNFGVVYPGIIYRSACPRASNFNFL 84
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +3
Query: 33 ILKAGAIEPDTFETSISQALVELETNSDLKAQLRELYITKAKEIEL 170
I + G + +TF+ +SQA ++ + L +RE ++ E +L
Sbjct: 3170 ISRLGVVSKNTFQLPMSQANIQRFAENVLPVSVREAFLRDFVETKL 3215
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 312 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 437
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,729
Number of Sequences: 5004
Number of extensions: 50933
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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