Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B06
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    27   2.5  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   5.7  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    25   7.5  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   10.0 
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   10.0 

>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +1

Query: 346 ICLFDSQNMRSKKSIFHRLTLFHIFRENFILSLVEIR 456
           +C+   ++ ++KKS F  L +F I  +N  + +V+++
Sbjct: 420 LCVKVDRHTKTKKSTFSNLEIFRIREKNIPVEVVDLK 456


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -3

Query: 289 TSTIPCPRSGPCVCEQLKKIKKNLYILQSMSWHPMLTQNI*KYLHHLYD 143
           T  IPCPR+G     +L     N  I    S+ P +   +  Y +  +D
Sbjct: 342 TQNIPCPRAGHSHTYELAPASPNTSISWIQSYSPRIGVTLQVYSNANFD 390


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 91  KHHSHFFFNI*DIKLGSSCI*YI*LNI 11
           KHH+ F F I D+ LG     Y  L++
Sbjct: 431 KHHASFIFRIKDLDLGQLATAYALLHL 457


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = +1

Query: 331 FSNRLICLFDSQNMRSK---KSIFHRL 402
           F NRL+ LFD+++ R +   K+  HR+
Sbjct: 343 FFNRLLALFDTEDPRERELLKTTLHRI 369


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 109 RDCYNFKHHSHFFFNI*DIKLGSSCI*Y 26
           ++C  F++H  FF     + L S C+ Y
Sbjct: 131 KNCVGFRNHKFFFLECFYLNLYSICVLY 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,191,449
Number of Sequences: 5004
Number of extensions: 43015
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)