Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B06
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_1026 + 13313672-13313876,13341211-13342005,13363815-133638...    31   0.62 
11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644           31   0.82 
10_02_0059 + 4785858-4786988                                           30   1.1  
09_02_0555 - 10588685-10592038                                         30   1.1  
03_02_1029 - 13488535-13493037                                         30   1.1  
10_04_0010 - 7487455-7489490,7489569-7489980                           30   1.4  

>03_02_1026 +
           13313672-13313876,13341211-13342005,13363815-13363855,
           13363967-13364140
          Length = 404

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 392 FIDLLYFTFLEKILFFHWSKLDYNHHCKLVLFLY*QHYMSSIATKQKTEN 541
           ++D     F++ IL +  S+ D+ HH +LVL    +H + +  +K    N
Sbjct: 289 YLDKFVVVFIDDILVYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCNNNN 338


>11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644
          Length = 581

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 392 FIDLLYFTFLEKILFFHWSKLDYNHHCKLVLFLY*QHYMSS 514
           ++D     F++ IL +  S+ D+ HH +LVL    +H   S
Sbjct: 163 YLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQFES 203


>10_02_0059 + 4785858-4786988
          Length = 376

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 392 FIDLLYFTFLEKILFFHWSKLDYNHHCKLVLFLY*QHYMSSIATK 526
           ++D     F++ IL +  S+ D+ HH +LVL    +H + +  +K
Sbjct: 137 YLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSK 181


>09_02_0555 - 10588685-10592038
          Length = 1117

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 392 FIDLLYFTFLEKILFFHWSKLDYNHHCKLVLFLY*QHYMSSIATK 526
           ++D     F++ IL +  S+ D+ HH +LVL    +H + +  +K
Sbjct: 324 YLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSK 368


>03_02_1029 - 13488535-13493037
          Length = 1500

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 392 FIDLLYFTFLEKILFFHWSKLDYNHHCKLVLFLY*QHYMSSIATK 526
           ++D     F++ IL +  S+ D+ HH +LVL    +H + +  +K
Sbjct: 707 YLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSK 751


>10_04_0010 - 7487455-7489490,7489569-7489980
          Length = 815

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 392 FIDLLYFTFLEKILFFHWSKLDYNHHCKLVLFLY*QHYMSSIATK 526
           ++D     F++ IL +  S+ D+ HH +LVL    +H + +  +K
Sbjct: 93  YLDKFVVVFIDDILVYSQSEEDHQHHLRLVLGKLREHQLYAKLSK 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,009,114
Number of Sequences: 37544
Number of extensions: 237904
Number of successful extensions: 406
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)