Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_B06
(558 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16685-8|AAO12393.1| 285|Caenorhabditis elegans Hypothetical pr... 28 5.2
L16685-7|AAO12394.1| 306|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z92822-7|CAH10786.1| 601|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z83244-9|CAH10804.1| 601|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z83244-8|CAH10803.1| 454|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z83244-3|CAD18878.1| 437|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z83244-2|CAB60300.2| 462|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z83244-1|CAB05827.2| 634|Caenorhabditis elegans Hypothetical pr... 27 9.1
U97008-14|AAB52302.2| 298|Caenorhabditis elegans Serpentine rec... 27 9.1
AF145376-1|AAD39815.1| 634|Caenorhabditis elegans LIT-1 protein. 27 9.1
AF143244-1|AAD37361.1| 462|Caenorhabditis elegans protein kinas... 27 9.1
AF143243-1|AAD37360.1| 454|Caenorhabditis elegans protein kinas... 27 9.1
>L16685-8|AAO12393.1| 285|Caenorhabditis elegans Hypothetical
protein ZC21.6a protein.
Length = 285
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 404 LYFTFLEKILFFHWSKLDYNHHCKLVLFL 490
L F FL IL H +LDYN + + LFL
Sbjct: 73 LLFCFLLCILLVHQGELDYNSNSVIHLFL 101
>L16685-7|AAO12394.1| 306|Caenorhabditis elegans Hypothetical
protein ZC21.6b protein.
Length = 306
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 404 LYFTFLEKILFFHWSKLDYNHHCKLVLFL 490
L F FL IL H +LDYN + + LFL
Sbjct: 139 LLFCFLLCILLVHQGELDYNSNSVIHLFL 167
>Z92822-7|CAH10786.1| 601|Caenorhabditis elegans Hypothetical
protein W06F12.1d protein.
Length = 601
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 364 QNMRSKKSIFHRLTLFHIFRENFILSLVEI 453
QN+ S K +F + + FR + +LSL++I
Sbjct: 243 QNLASCKRVFREIKMLSSFRHDNVLSLLDI 272
>Z83244-9|CAH10804.1| 601|Caenorhabditis elegans Hypothetical
protein W06F12.1d protein.
Length = 601
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 364 QNMRSKKSIFHRLTLFHIFRENFILSLVEI 453
QN+ S K +F + + FR + +LSL++I
Sbjct: 243 QNLASCKRVFREIKMLSSFRHDNVLSLLDI 272
>Z83244-8|CAH10803.1| 454|Caenorhabditis elegans Hypothetical
protein W06F12.1e protein.
Length = 454
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 364 QNMRSKKSIFHRLTLFHIFRENFILSLVEI 453
QN+ S K +F + + FR + +LSL++I
Sbjct: 96 QNLASCKRVFREIKMLSSFRHDNVLSLLDI 125
>Z83244-3|CAD18878.1| 437|Caenorhabditis elegans Hypothetical
protein W06F12.1c protein.
Length = 437
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 364 QNMRSKKSIFHRLTLFHIFRENFILSLVEI 453
QN+ S K +F + + FR + +LSL++I
Sbjct: 79 QNLASCKRVFREIKMLSSFRHDNVLSLLDI 108
>Z83244-2|CAB60300.2| 462|Caenorhabditis elegans Hypothetical
protein W06F12.1b protein.
Length = 462
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 364 QNMRSKKSIFHRLTLFHIFRENFILSLVEI 453
QN+ S K +F + + FR + +LSL++I
Sbjct: 104 QNLASCKRVFREIKMLSSFRHDNVLSLLDI 133
>Z83244-1|CAB05827.2| 634|Caenorhabditis elegans Hypothetical
protein W06F12.1a protein.
Length = 634
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 364 QNMRSKKSIFHRLTLFHIFRENFILSLVEI 453
QN+ S K +F + + FR + +LSL++I
Sbjct: 276 QNLASCKRVFREIKMLSSFRHDNVLSLLDI 305
>U97008-14|AAB52302.2| 298|Caenorhabditis elegans Serpentine
receptor, class x protein56 protein.
Length = 298
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = +2
Query: 383 NQSFIDLLYFT-----FLEKILFFHWSKLDYNHHCK-LVLFL 490
NQ+F D L+ T F +LF + Y+HHC +LFL
Sbjct: 45 NQAFADALHSTTFLLYFCPMVLFDQSTMKQYSHHCGFFILFL 86
>AF145376-1|AAD39815.1| 634|Caenorhabditis elegans LIT-1 protein.
Length = 634
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 364 QNMRSKKSIFHRLTLFHIFRENFILSLVEI 453
QN+ S K +F + + FR + +LSL++I
Sbjct: 276 QNLASCKRVFREIKMLSSFRHDNVLSLLDI 305
>AF143244-1|AAD37361.1| 462|Caenorhabditis elegans protein kinase
LIT-1b protein.
Length = 462
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 364 QNMRSKKSIFHRLTLFHIFRENFILSLVEI 453
QN+ S K +F + + FR + +LSL++I
Sbjct: 104 QNLASCKRVFREIKMLSSFRHDNVLSLLDI 133
>AF143243-1|AAD37360.1| 454|Caenorhabditis elegans protein kinase
LIT-1a protein.
Length = 454
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 364 QNMRSKKSIFHRLTLFHIFRENFILSLVEI 453
QN+ S K +F + + FR + +LSL++I
Sbjct: 96 QNLASCKRVFREIKMLSSFRHDNVLSLLDI 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,088,421
Number of Sequences: 27780
Number of extensions: 240250
Number of successful extensions: 523
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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