Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B04
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit L28...    33   0.019
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    28   0.95 
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    28   0.95 
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   1.3  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    27   2.2  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   2.9  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   5.1  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   5.1  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   5.1  
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p...    22   7.3  
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    25   8.9  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    25   8.9  

>SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit
           L28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 176

 Score = 33.5 bits (73), Expect = 0.019
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +2

Query: 299 AEIHEGIWGGEAVVKGFQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRL 478
           ++  + ++GG     G  K      +    W+P      + S VL     + VT R +R 
Sbjct: 25  SKFQQNLYGGSKTEAGNNKIPKFGHKTRRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRT 84

Query: 479 INDHYGFDHYLL 514
           I+   G D YL+
Sbjct: 85  IDKEGGLDEYLV 96


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 401 VWVPNNVVLYGVSDHV 354
           VWV NNV+LY   DH+
Sbjct: 541 VWVENNVLLYATLDHL 556


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -2

Query: 388 IMW-YSTASRITFLETFYYCFTTPYSLMNLSWIF*RDRYVLYR*CF 254
           I+W YST+ R+T L TF   FTT + +   S +  +D+  L+R  F
Sbjct: 174 ILWFYSTSLRVTLL-TFLLSFTTLHFVNKFSLLL-KDQQYLHRQVF 217


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 347 FQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRLIND 487
           F   DP RRR P  +V  L+R +   E     L+   +D    +I D
Sbjct: 46  FYPEDPIRRRAPKEYVEALERQIAFFEAFVKKLAKVGSDEQSLMIQD 92


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 392 VPILKRTVVRSEVLNTHLSVTVTDRTIRLIND 487
           VPILKR + +       L+V +TD   +L+ D
Sbjct: 257 VPILKRALAQRSQSMLRLTVIITDNLCKLVPD 288


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 275  IPIPLKYPAEIHEGIWGGEAVVKG 346
            I +PL   AEI +G+   EAV KG
Sbjct: 1890 IIVPLAAGAEIRQGLTASEAVAKG 1913


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 239 DELTGETLPIQNIPIPLKYPA 301
           +E+T    PIQ++ IP+ YP+
Sbjct: 541 NEITNTPEPIQDLSIPIHYPS 561


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +2

Query: 71   LQSTARQLSKTFKKKNRFDIGIASELPAAYKKFWREWKLLQPAAVHFVPQE 223
            +++  +  S+   KKN  +I  A+    ++    + WKL  PA V  V ++
Sbjct: 1301 VEAETKSKSEKSPKKNGTNISDANNKNESHVSLMKNWKLGSPAFVTLVKEK 1351


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 24  ISFMLLL*NCQWHLPDYSRLP 86
           ISF  ++ + Q+HLPD+S  P
Sbjct: 213 ISFQWIVVDFQFHLPDFSSTP 233


>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 202

 Score = 22.2 bits (45), Expect(2) = 7.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 221 EGKWKRDELTGETLPIQNIPIPLK 292
           +G W   +LTG  +P +N+ I ++
Sbjct: 137 KGAWSELDLTGSLVPPKNLFIDVR 160



 Score = 21.0 bits (42), Expect(2) = 7.3
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 140 SELPAAYKKFWREWKL 187
           SEL AAYK  W E  L
Sbjct: 130 SELLAAYKGAWSELDL 145


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 159 IRSFGVNGNFYSQRQFILFLKKENGNVM 242
           +  FG++  FY Q Q   ++K   GN +
Sbjct: 232 LSDFGLSTGFYKQDQSASYMKPRTGNTV 259


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 53  SMASSRLQSTARQLSKTFKKKNRFDIGIA 139
           S A S L+   RQL K+ K+KN+   G +
Sbjct: 577 SDALSELEEDYRQLKKSKKRKNQASFGFS 605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,171,485
Number of Sequences: 5004
Number of extensions: 44251
Number of successful extensions: 114
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)