Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_B04
(515 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z97634-6|CAI95596.1| 218|Homo sapiens mitochondrial ribosomal p... 89 9e-18
Z97634-5|CAM26404.1| 194|Homo sapiens mitochondrial ribosomal p... 89 9e-18
Z97634-4|CAI95595.1| 256|Homo sapiens mitochondrial ribosomal p... 89 9e-18
Z97634-3|CAI95594.1| 256|Homo sapiens mitochondrial ribosomal p... 89 9e-18
Z97634-2|CAM26403.1| 240|Homo sapiens mitochondrial ribosomal p... 89 9e-18
BC000990-1|AAH00990.2| 256|Homo sapiens mitochondrial ribosomal... 89 9e-18
BC000507-1|AAH00507.2| 256|Homo sapiens mitochondrial ribosomal... 89 9e-18
AK096844-1|BAC04874.1| 158|Homo sapiens protein ( Homo sapiens ... 55 2e-07
M33782-1|AAA36730.1| 508|Homo sapiens protein ( Human TFEB prot... 31 2.4
CR541655-1|CAG46456.1| 375|Homo sapiens GPR30 protein. 30 5.5
>Z97634-6|CAI95596.1| 218|Homo sapiens mitochondrial ribosomal
protein L28 protein.
Length = 218
Score = 89.0 bits (211), Expect = 9e-18
Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Frame = +2
Query: 131 GIASELPAAYKKFWREWKLLQPAAVHFVPQEGKWKRDELTGETLPIQNIPIPLKYPAEIH 310
GI S LP Y + E + P VH+ P K+K + G+ ++++PIP+ +P E
Sbjct: 19 GICSRLPGHYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQ 76
Query: 311 EGIWGGEAVVKG--FQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRLIN 484
G+WGGE + G + D +R+ W P L SE+L+ +VTVT RT+ LI+
Sbjct: 77 RGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLID 136
Query: 485 DHYGFDHYLL 514
+ YG D Y+L
Sbjct: 137 EAYGLDFYIL 146
>Z97634-5|CAM26404.1| 194|Homo sapiens mitochondrial ribosomal
protein L28 protein.
Length = 194
Score = 89.0 bits (211), Expect = 9e-18
Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Frame = +2
Query: 131 GIASELPAAYKKFWREWKLLQPAAVHFVPQEGKWKRDELTGETLPIQNIPIPLKYPAEIH 310
GI S LP Y + E + P VH+ P K+K + G+ ++++PIP+ +P E
Sbjct: 19 GICSRLPGHYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQ 76
Query: 311 EGIWGGEAVVKG--FQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRLIN 484
G+WGGE + G + D +R+ W P L SE+L+ +VTVT RT+ LI+
Sbjct: 77 RGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLID 136
Query: 485 DHYGFDHYLL 514
+ YG D Y+L
Sbjct: 137 EAYGLDFYIL 146
>Z97634-4|CAI95595.1| 256|Homo sapiens mitochondrial ribosomal
protein L28 protein.
Length = 256
Score = 89.0 bits (211), Expect = 9e-18
Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Frame = +2
Query: 131 GIASELPAAYKKFWREWKLLQPAAVHFVPQEGKWKRDELTGETLPIQNIPIPLKYPAEIH 310
GI S LP Y + E + P VH+ P K+K + G+ ++++PIP+ +P E
Sbjct: 19 GICSRLPGHYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQ 76
Query: 311 EGIWGGEAVVKG--FQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRLIN 484
G+WGGE + G + D +R+ W P L SE+L+ +VTVT RT+ LI+
Sbjct: 77 RGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLID 136
Query: 485 DHYGFDHYLL 514
+ YG D Y+L
Sbjct: 137 EAYGLDFYIL 146
>Z97634-3|CAI95594.1| 256|Homo sapiens mitochondrial ribosomal
protein L28 protein.
Length = 256
Score = 89.0 bits (211), Expect = 9e-18
Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Frame = +2
Query: 131 GIASELPAAYKKFWREWKLLQPAAVHFVPQEGKWKRDELTGETLPIQNIPIPLKYPAEIH 310
GI S LP Y + E + P VH+ P K+K + G+ ++++PIP+ +P E
Sbjct: 19 GICSRLPGHYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQ 76
Query: 311 EGIWGGEAVVKG--FQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRLIN 484
G+WGGE + G + D +R+ W P L SE+L+ +VTVT RT+ LI+
Sbjct: 77 RGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLID 136
Query: 485 DHYGFDHYLL 514
+ YG D Y+L
Sbjct: 137 EAYGLDFYIL 146
>Z97634-2|CAM26403.1| 240|Homo sapiens mitochondrial ribosomal
protein L28 protein.
Length = 240
Score = 89.0 bits (211), Expect = 9e-18
Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Frame = +2
Query: 131 GIASELPAAYKKFWREWKLLQPAAVHFVPQEGKWKRDELTGETLPIQNIPIPLKYPAEIH 310
GI S LP Y + E + P VH+ P K+K + G+ ++++PIP+ +P E
Sbjct: 19 GICSRLPGHYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQ 76
Query: 311 EGIWGGEAVVKG--FQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRLIN 484
G+WGGE + G + D +R+ W P L SE+L+ +VTVT RT+ LI+
Sbjct: 77 RGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLID 136
Query: 485 DHYGFDHYLL 514
+ YG D Y+L
Sbjct: 137 EAYGLDFYIL 146
>BC000990-1|AAH00990.2| 256|Homo sapiens mitochondrial ribosomal
protein L28 protein.
Length = 256
Score = 89.0 bits (211), Expect = 9e-18
Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Frame = +2
Query: 131 GIASELPAAYKKFWREWKLLQPAAVHFVPQEGKWKRDELTGETLPIQNIPIPLKYPAEIH 310
GI S LP Y + E + P VH+ P K+K + G+ ++++PIP+ +P E
Sbjct: 19 GICSRLPGYYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQ 76
Query: 311 EGIWGGEAVVKG--FQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRLIN 484
G+WGGE + G + D +R+ W P L SE+L+ +VTVT RT+ LI+
Sbjct: 77 RGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLID 136
Query: 485 DHYGFDHYLL 514
+ YG D Y+L
Sbjct: 137 EAYGLDFYIL 146
>BC000507-1|AAH00507.2| 256|Homo sapiens mitochondrial ribosomal
protein L28 protein.
Length = 256
Score = 89.0 bits (211), Expect = 9e-18
Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Frame = +2
Query: 131 GIASELPAAYKKFWREWKLLQPAAVHFVPQEGKWKRDELTGETLPIQNIPIPLKYPAEIH 310
GI S LP Y + E + P VH+ P K+K + G+ ++++PIP+ +P E
Sbjct: 19 GICSRLPGHYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQ 76
Query: 311 EGIWGGEAVVKG--FQKRDPRRRRVPHYWVPILKRTVVRSEVLNTHLSVTVTDRTIRLIN 484
G+WGGE + G + D +R+ W P L SE+L+ +VTVT RT+ LI+
Sbjct: 77 RGLWGGEGWILGQIYANNDKLSKRLKKVWKPQLFEREFYSEILDKKFTVTVTMRTLDLID 136
Query: 485 DHYGFDHYLL 514
+ YG D Y+L
Sbjct: 137 EAYGLDFYIL 146
>AK096844-1|BAC04874.1| 158|Homo sapiens protein ( Homo sapiens
cDNA FLJ39525 fis, clone PUAEN2002758. ).
Length = 158
Score = 54.8 bits (126), Expect = 2e-07
Identities = 25/72 (34%), Positives = 39/72 (54%)
Frame = +2
Query: 131 GIASELPAAYKKFWREWKLLQPAAVHFVPQEGKWKRDELTGETLPIQNIPIPLKYPAEIH 310
GI S LP Y + E + P VH+ P K+K + G+ ++++PIP+ +P E
Sbjct: 19 GICSRLPGHYLRSLEEERT--PTPVHYRPHGAKFKINPKNGQRERVEDVPIPIYFPPESQ 76
Query: 311 EGIWGGEAVVKG 346
G+WGGE + G
Sbjct: 77 RGLWGGEGWILG 88
>M33782-1|AAA36730.1| 508|Homo sapiens protein ( Human TFEB protein
mRNA, partial cds. ).
Length = 508
Score = 31.1 bits (67), Expect = 2.4
Identities = 19/83 (22%), Positives = 40/83 (48%)
Frame = +2
Query: 59 ASSRLQSTARQLSKTFKKKNRFDIGIASELPAAYKKFWREWKLLQPAAVHFVPQEGKWKR 238
A+ RL AR+ + +R + + A ++ RE ++ Q A +H++ Q+ + ++
Sbjct: 77 AADRLTFRAREPAPAATMASRIGLRMQLMREQAQQEEQRE-RMQQQAVMHYMQQQQQQQQ 135
Query: 239 DELTGETLPIQNIPIPLKYPAEI 307
+L G P N P+ + P +
Sbjct: 136 QQLGGPPTPAINTPVHFQSPPPV 158
>CR541655-1|CAG46456.1| 375|Homo sapiens GPR30 protein.
Length = 375
Score = 29.9 bits (64), Expect = 5.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 446 KGGCLILQTLLQFFLVWVPNNVVL 375
K C+IL +L FF+ W+P NV +
Sbjct: 256 KALCMILAVVLVFFVCWLPENVFI 279
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,419,960
Number of Sequences: 237096
Number of extensions: 1448905
Number of successful extensions: 3451
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3444
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -