Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B04
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077539-3|AAC26291.1|  310|Caenorhabditis elegans Hypothetical ...    91   6e-19
AF068709-15|AAC19246.2|  317|Caenorhabditis elegans Serpentine r...    28   4.6  
AC024805-15|AAK39331.2|  344|Caenorhabditis elegans Hypothetical...    28   4.6  
U97005-10|AAK72084.1|  646|Caenorhabditis elegans Hypothetical p...    27   6.0  
U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z81073-8|CAN86905.1|  271|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z81073-7|CAB03032.2|  248|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z50794-4|CAC35819.1|  396|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AF077539-3|AAC26291.1|  310|Caenorhabditis elegans Hypothetical
           protein T25D3.2 protein.
          Length = 310

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 7/134 (5%)
 Frame = +2

Query: 134 IASELPAAYKKFWREWKLLQPAAVHFVPQEGKWKRDELTGETLPIQNIPIPLKYPAEIHE 313
           +   LP  YK  + E  L     VH+ P   ++  D      + ++  PI      E  +
Sbjct: 41  VVHRLPEHYKTRYWETILSDKTPVHYRPPTSRFAHDSFKNVEIELEENPIIGIRTPEGDD 100

Query: 314 GIWGGEAVVKGFQKRDP--RRRRVPHYWVP-----ILKRTVVRSEVLNTHLSVTVTDRTI 472
           G+WGGE VVKG+ +  P  +++ +P YWVP      LK  V+ SE+L+ ++ VTVT+R +
Sbjct: 101 GLWGGERVVKGWIESAPYTKKKILPRYWVPKLFFPALKNVVLYSEILDKYIKVTVTERAM 160

Query: 473 RLINDHYGFDHYLL 514
           RLI++H+G D+Y+L
Sbjct: 161 RLIDEHFGLDYYIL 174


>AF068709-15|AAC19246.2|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 62 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/57 (26%), Positives = 22/57 (38%)
 Frame = +2

Query: 149 PAAYKKFWREWKLLQPAAVHFVPQEGKWKRDELTGETLPIQNIPIPLKYPAEIHEGI 319
           P  Y+ FW  W LL    V F     K+  D    E   +    I + +P  + + I
Sbjct: 131 PYQYENFWSRWNLLVFLVVCFFSHLPKYLWDGFLYEVYIVNGQLICINFPTTLDQAI 187


>AC024805-15|AAK39331.2|  344|Caenorhabditis elegans Hypothetical
           protein Y51H7C.13 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 260 LPIQNIPIPLKYPAEIHEGIWGGEAVV 340
           +P +N P P  YP E+  G  GGE  +
Sbjct: 283 VPTENPPSPTNYPPEVTTGSPGGEVEI 309


>U97005-10|AAK72084.1|  646|Caenorhabditis elegans Hypothetical
           protein F19F10.12 protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 140 SELPAAYKKFWREWKLLQPAAVHFVPQEGKWKRDELTGE--TLPIQN 274
           +E+   Y K   E  L   + +  +P + KWKR+E  G+    P QN
Sbjct: 120 TEIAYQYGKLLMEEMLEFISRIEVLPSDKKWKREEFCGKFPNPPFQN 166


>U28940-6|AAA68352.1|  925|Caenorhabditis elegans Hypothetical
           protein T24H7.2 protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 161 KKFWREWKLLQPAAVHFVPQEGKWKRDELTGE 256
           K F  E K++ P  VHFV +    K +E+TGE
Sbjct: 422 KPFNIEEKVIFPVEVHFVSKIRDEKTEEITGE 453


>Z81073-8|CAN86905.1|  271|Caenorhabditis elegans Hypothetical
           protein F30F8.5b protein.
          Length = 271

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 459 VTVTERWVFNTSDLTTVLFSMGTQ 388
           +TVTE W FNT +     F +G Q
Sbjct: 148 MTVTEAWTFNTINAVIRKFDLGCQ 171


>Z81073-7|CAB03032.2|  248|Caenorhabditis elegans Hypothetical
           protein F30F8.5a protein.
          Length = 248

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 459 VTVTERWVFNTSDLTTVLFSMGTQ 388
           +TVTE W FNT +     F +G Q
Sbjct: 148 MTVTEAWTFNTINAVIRKFDLGCQ 171


>Z50794-4|CAC35819.1|  396|Caenorhabditis elegans Hypothetical
           protein F59F5.8 protein.
          Length = 396

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -3

Query: 432 NTSDLTTVLFSMGTQ*CGTLRRLGSRFWKPFTTASPPHIPS*ISAGYFRGIGMFCI 265
           NT+DL  ++ +  T  C    ++  +FW   TT   P+  + ISA  F+ + + C+
Sbjct: 31  NTNDLLNIVSN--TSKCDANTKI-EQFWLRSTTGLIPYYVNVISATVFKNMTLVCL 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,704,106
Number of Sequences: 27780
Number of extensions: 234064
Number of successful extensions: 626
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)