Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B02
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006777-8|AAK72305.2|  367|Caenorhabditis elegans Seven tm rece...    27   6.5  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AC006777-8|AAK72305.2|  367|Caenorhabditis elegans Seven tm
           receptor protein 221 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 474 EPTVNLINNLVISNSHFLLVLFFSSVCY 391
           +P++ L  N++  N  F  +LFF   CY
Sbjct: 202 KPSIGLALNIMTMNISFFAILFFGLKCY 229


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -2

Query: 327  RDRSNTHSDLN*VYYLESFITSLIQIIL---FTHSFVLFIYIKILFNMIVQSTCSLQLEY 157
            R R   HS+ N +Y+L + + +LI++IL    T+SF +  +  ++    V +  S  L  
Sbjct: 1326 RLRFEPHSNTNSIYHLLAVVYALIRVILKHKLTNSFAVGGFNSLIVLAAVDAAPSHYLND 1385

Query: 156  VFH 148
            + H
Sbjct: 1386 LLH 1388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,935,342
Number of Sequences: 27780
Number of extensions: 202831
Number of successful extensions: 436
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)