Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_B01
(209 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc... 86 7e-19
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 30 0.048
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 30 0.048
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 26 0.78
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 25 1.4
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,... 25 1.8
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 24 2.4
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha... 24 2.4
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 24 2.4
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 24 2.4
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 23 4.2
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 23 4.2
SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 23 5.5
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom... 23 7.3
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 23 7.3
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 22 9.6
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy... 22 9.6
>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 85.8 bits (203), Expect = 7e-19
Identities = 39/50 (78%), Positives = 47/50 (94%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNR 209
MKLVRFLMKL++ETV+IELKNG++VHGTIT VD+ MNTHLKAVK+T+K R
Sbjct: 1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGR 50
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 29.9 bits (64), Expect = 0.048
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 81 MKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLK 203
++LSHE EL+ SV+ + VD+ N+H +++ V L+
Sbjct: 208 IRLSHEAHVAELETISVILYQLAKVDLFQNSHFESLLVMLR 248
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 29.9 bits (64), Expect = 0.048
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKV 194
M F L VT+ELKN + G + VD +N L+ + V
Sbjct: 1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISV 45
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 0.78
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 102 VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTL 200
+ +ELKNG +G + D MN L+ V T+
Sbjct: 15 ILVELKNGETFNGHLENCDNYMNLTLREVIRTM 47
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 25.0 bits (52), Expect = 1.4
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -2
Query: 199 KVTFTAFRCVFMATSTPVI--VPWTTLPFFNSIVTVSWLSFIKNLTSFILLAY 47
K F F+ +F A V+ +P+T + F+N IV S+ + + LAY
Sbjct: 178 KAFFCTFQLLFYAFRPLVVRRLPFTLMHFWNIIVQFSFDYLVVRYVGWRALAY 230
>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 546
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 136 WTTLPFFNSIVTVSWLSFIKNLTSFILLAYRLIFIE 29
W T PF+ V + WL F+ N T+ + L ++I+
Sbjct: 246 WGTSPFYYYFVRLPWL-FL-NPTTLLFLLISFVYIK 279
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 24.2 bits (50), Expect = 2.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 118 FNSIVTVSWLSFIKNLTSFILLAYRLIFIENKGGVGSL 5
FN+I T+ ++ +K L + + R+ IEN G+ L
Sbjct: 113 FNNIKTIRNINHLKGLENLFFVQNRIRRIENLEGLDRL 150
>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 24.2 bits (50), Expect = 2.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 93 HETVTIELKNGSVVHGTITGVD 158
+E T+ ++NG + HGT G +
Sbjct: 43 NEIATLTIRNGPIFHGTSFGAN 64
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 96 ETVTIELKNGSVVHGTITGVDVAM 167
E T+E K S+VH ++T D+A+
Sbjct: 449 EEKTLEEKKPSMVHDSVTSDDIAV 472
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 138 GTITGVDVAMNTHLKAVKVTLKN 206
GT++G++ AM LK K +KN
Sbjct: 404 GTVSGLEAAMQDVLKEKKQEMKN 426
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 23.4 bits (48), Expect = 4.2
Identities = 7/27 (25%), Positives = 14/27 (51%)
Frame = -2
Query: 151 PVIVPWTTLPFFNSIVTVSWLSFIKNL 71
P + PW + + + T+ W+ +NL
Sbjct: 530 PKLSPWNMMIVLHGLTTIGWILSRENL 556
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 23.4 bits (48), Expect = 4.2
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = -2
Query: 115 NSIVTVSWLSFIKNLTSFILLAYRLIFIENKGGVGSL 5
+S++ + W+SF + +TS + + R+ ++ K V ++
Sbjct: 347 SSVLDIEWISFDEFVTSDVEGSLRVYKVDGKAPVSTV 383
>SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 157 STPVIVPWTTLPFF 116
+TP IV WT +P F
Sbjct: 145 NTPTIVHWTVIPKF 158
>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -2
Query: 82 IKNLTSFILLAYRLIFIENK 23
++N+T +LL + F+ENK
Sbjct: 182 VRNVTQILLLESGISFLENK 201
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -2
Query: 145 IVPWTTLPFFNSIVTVSWLSFIKNLTSFILLAYRLIF 35
IV W L F+ + +LSF N+ S + A +++
Sbjct: 134 IVLWFVLGIFSFFIPTKFLSFWGNIISVMGSALFIVY 170
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 127 LPFFNSIVTVSWLSFIKNLTSFIL 56
+P+ + + V W+ FI + +FIL
Sbjct: 471 IPYMSGRLMVEWILFIIHRPTFIL 494
>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 436
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 173 RIHGDIDTSYSSVDNAAVFQLNSHR 99
R ++D S V+NAA+ +NS R
Sbjct: 19 RKENNLDGSNRDVENAALVTINSKR 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 801,249
Number of Sequences: 5004
Number of extensions: 12751
Number of successful extensions: 50
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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