Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_B01
(209 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249... 89 6e-19
04_04_0192 - 23471346-23471572,23473004-23473195,23474342-234744... 83 2e-17
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 32 0.073
08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068 31 0.096
04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177... 28 0.90
02_01_0022 - 135655-135717,137426-137482,137559-137678,137762-13... 28 0.90
01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380... 28 0.90
03_02_0318 + 7417361-7417519,7417638-7417690,7417770-7417836,741... 28 1.2
07_01_0741 - 5651773-5651880,5651987-5652055,5652233-5652280,565... 27 1.6
08_01_0238 - 1988688-1988830,1988989-1989257,1989339-1989600,198... 27 2.7
04_04_0962 + 29728983-29729034,29729622-29731369,29731656-297317... 27 2.7
03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775 26 3.6
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655... 26 3.6
04_04_0963 - 29743363-29744450,29744729-29745043,29745116-297454... 26 4.8
10_01_0318 + 3493913-3496976,3497064-3497392 25 6.3
02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698... 25 6.3
12_02_0785 + 23135764-23135973,23136061-23136713,23136822-231369... 25 8.4
12_02_0504 - 19771191-19772134,19772210-19774892 25 8.4
10_08_0273 + 16395117-16395444,16397030-16397135,16397174-16397321 25 8.4
06_03_0345 + 19758188-19758382,19759857-19759952,19760061-197601... 25 8.4
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 25 8.4
02_03_0231 - 16636377-16636403,16636590-16636645,16636793-166368... 25 8.4
>02_04_0403 -
22622014-22622075,22622159-22622350,22624834-22624910,
22625026-22625039
Length = 114
Score = 88.6 bits (210), Expect = 6e-19
Identities = 40/50 (80%), Positives = 47/50 (94%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNR 209
MKLVRFLMKL++ETVTIELKNG+ VHGTITGVD++MNTHLK VK+TLK +
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGK 50
>04_04_0192 -
23471346-23471572,23473004-23473195,23474342-23474418,
23475810-23475850,23475928-23475974,23476108-23476194,
23476807-23477011,23477747-23477866
Length = 331
Score = 83.4 bits (197), Expect = 2e-17
Identities = 37/47 (78%), Positives = 45/47 (95%)
Frame = +3
Query: 69 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNR 209
+RFLMKL++ETVTIELKNG+VVHGTITGVD++MNTHLK VK+TLK +
Sbjct: 166 LRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGK 212
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 31.9 bits (69), Expect = 0.073
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 108 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKN 206
+ELKNG +G + D MN HL+ V T K+
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKD 49
>08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068
Length = 67
Score = 31.5 bits (68), Expect = 0.096
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKV 194
M + +L + VT+ELKN + GT+ VD +N L+ +V
Sbjct: 1 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRV 45
>04_04_0961 +
29715938-29716034,29716918-29717133,29717438-29717776,
29718247-29719274,29719465-29719551,29719636-29720043,
29720394-29720558,29720742-29721036,29721131-29721345,
29721838-29722143,29722474-29722537,29722644-29722883,
29722959-29723062
Length = 1187
Score = 28.3 bits (60), Expect = 0.90
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 124 PFFNSIVTVSWLSFIKNLTSFILLAYRLIFI 32
P+F++I ++ WLSF N+ S + A+ L +
Sbjct: 838 PWFHNISSMEWLSFRLNMLSNFVFAFSLTLL 868
>02_01_0022 -
135655-135717,137426-137482,137559-137678,137762-137920
Length = 132
Score = 28.3 bits (60), Expect = 0.90
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 69 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKN 206
V+ L + + VT+ELK G V G++ + N L + T K+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLDNITFTAKD 54
>01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,
3807118-3807282,3807363-3807657,3807739-3807953,
3808125-3808430,3808539-3808602,3808735-3808974,
3809150-3809253
Length = 1493
Score = 28.3 bits (60), Expect = 0.90
Identities = 13/48 (27%), Positives = 29/48 (60%)
Frame = -2
Query: 169 FMATSTPVIVPWTTLPFFNSIVTVSWLSFIKNLTSFILLAYRLIFIEN 26
F++T++ ++ ++ F+N+ + WL F ++ S + A+ LIF+ N
Sbjct: 1130 FVSTNSHLMDAFSRPKFYNA-AAMEWLCFRLDMLSSLTFAFSLIFLVN 1176
>03_02_0318 +
7417361-7417519,7417638-7417690,7417770-7417836,
7417925-7417981,7420005-7420067
Length = 132
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 69 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKN 206
V+ L + + VT+ELK G V G + + N L + T K+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNITFTAKD 54
>07_01_0741 -
5651773-5651880,5651987-5652055,5652233-5652280,
5652487-5652657,5652746-5652899,5653720-5653797,
5654165-5654208,5654505-5654604,5655621-5655775
Length = 308
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 54 NKMKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMN-THLKAVKVTLKNR 209
N +K+ ++ V E+KNG+ G+ +D+ + H K K+T + R
Sbjct: 134 NDLKVAAEVVMPLINNVMAEIKNGTYPQGSFLNIDIPTDAAHHKGYKITKQGR 186
>08_01_0238 -
1988688-1988830,1988989-1989257,1989339-1989600,
1989693-1989805,1990560-1990594,1990771-1990878,
1992178-1992483
Length = 411
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 106 VTVSWLSFIKNLTSFILLAYRLIFIE 29
+T+SW+ + + + A RLIFIE
Sbjct: 227 ITISWVGVVYQMGGVVAEALRLIFIE 252
>04_04_0962 +
29728983-29729034,29729622-29731369,29731656-29731742,
29732035-29732199,29732437-29732526,29732863-29733027,
29733124-29733418,29733550-29733764,29733879-29733947,
29734107-29734184,29734466-29734529,29734658-29734897,
29734985-29735124
Length = 1135
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 124 PFFNSIVTVSWLSFIKNLTSFILLAYRLIFI 32
P+F+ + V WLSF NL + + L+ +
Sbjct: 827 PWFHLMAAVEWLSFRMNLLCNFVFGFSLVLL 857
>03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775
Length = 1441
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 24 LFSIKISL*ANKMKLVRFLMKLSHETVTIELKNGSVVHGTITGV 155
+FS+ + L A+ + + R L+H T+T + S + G I G+
Sbjct: 1101 IFSLFVLLVASLLLICRHRRSLAHMTMTAPRQEDSRIDGNIVGL 1144
>02_03_0406 +
18663986-18664059,18665082-18665405,18665499-18665559,
18666136-18666282,18666368-18666492,18666619-18666648,
18666689-18666893,18667532-18667741,18667886-18667888,
18670034-18670942,18671239-18672069
Length = 972
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 170 IHGDIDTSYSSVDNAAVFQLNSHRFVAELHQKSY*LHFV 54
+HG+I S S++ N V L+S+ + LHF+
Sbjct: 845 LHGEIPQSASNLKNLMVLDLSSNHLTGAIPSSLANLHFL 883
>04_04_0963 -
29743363-29744450,29744729-29745043,29745116-29745477,
29745947-29746013,29746111-29746954
Length = 891
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = -2
Query: 196 VTFTAFRCVFMATSTPVIVPWTTLPFFNSIVTVSW 92
VT + C+ + T + +P+ FF +++T++W
Sbjct: 118 VTASPALCLVVEQPTLIFMPYADRVFFENLLTLNW 152
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 170 IHGDIDTSYSSVDNAAVFQLNSHRFVAELH 81
+ G + + + N AV QLN++ F E+H
Sbjct: 405 LRGPVPLALWRLSNMAVLQLNNNSFSGEIH 434
>02_02_0120 +
6984482-6984643,6984748-6984797,6984936-6984996,
6985574-6985669,6985754-6985903,6986208-6986339,
6986641-6986768,6987285-6987327,6987935-6988018,
6989049-6989090,6989264-6989334,6989621-6989674,
6989789-6989894,6990038-6990106,6990824-6990967,
6992038-6992113,6992295-6992353
Length = 508
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 84 KLSHETVTIELKNGSVVHGTIT 149
KL+ +T+ LKN ++HG +T
Sbjct: 340 KLAEQTILESLKNERILHGDVT 361
>12_02_0785 +
23135764-23135973,23136061-23136713,23136822-23136903,
23137031-23137113,23137229-23137361,23137493-23137664,
23137929-23138656
Length = 686
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 184 AFRCVFMATSTPVIVPWTTLPFFNSIVTVSWLSFIKNLTSFILLA 50
A C F + S ++ + LPF NS+ S ++I L+ F+ LA
Sbjct: 110 ARECGFTSLSVRLVKVFLLLPFRNSMQPRSCPNYIYILSCFLQLA 154
>12_02_0504 - 19771191-19772134,19772210-19774892
Length = 1208
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 139 PWTTLPFFNSIVTVSWLSFIKNLTSFILLAYRLI 38
P LP F + + W S +KNL S ++LI
Sbjct: 844 PENVLPPFLKTLIIRWCSSLKNLPSIPCTLHQLI 877
>10_08_0273 + 16395117-16395444,16397030-16397135,16397174-16397321
Length = 193
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 186 PPSDAYSWRHR 154
PP D+ SWRHR
Sbjct: 50 PPDDSSSWRHR 60
>06_03_0345 +
19758188-19758382,19759857-19759952,19760061-19760144,
19760504-19760573,19760934-19761838,19763661-19764287
Length = 658
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 63 KLVRFLMKLSHETVTIELKNGSVVHG 140
K+ F K+ + +TIEL S++HG
Sbjct: 97 KMKSFRRKIQQKPLTIELIKSSMIHG 122
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 80 DEAQPRNGDY*VEKRQRCPRNYNWCRCRHEYASEGGKSNFEKS 208
+E + R V + R+ NW R R ++ GK +FE S
Sbjct: 178 EEEEMRKKGQPVPMEEWTQRSRNWVRARTPKITDEGKVSFENS 220
>02_03_0231 -
16636377-16636403,16636590-16636645,16636793-16636853,
16637590-16637649,16638007-16638096,16638775-16638906,
16639016-16639293,16639916-16639949,16640036-16640105,
16641170-16641282,16641654-16641836,16642106-16642283,
16642958-16643142,16643347-16643477,16643620-16643772,
16643849-16643995,16644662-16644737
Length = 657
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 63 KLVRFLMKLSHETVTIELKNGSVVHGTI--TGVDVAMNTHLKAVKV 194
+L+ L +L + V + +KNGS++ G + T D + +K +V
Sbjct: 89 RLIYVLTQLIGQHVDVHVKNGSIISGILHATNSDKDLGVIMKMAQV 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,179,405
Number of Sequences: 37544
Number of extensions: 79021
Number of successful extensions: 295
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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