Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_B01
(209 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L36188-1|AAA85339.1| 119|Homo sapiens small nuclear ribonucleop... 97 7e-21
J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantig... 97 7e-21
CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein. 97 7e-21
BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear ribonucle... 97 7e-21
BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear ribonucle... 97 7e-21
AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear ribonucle... 95 4e-20
CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein. 30 1.6
CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein. 30 1.6
BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small ... 30 1.6
BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonucl... 30 1.6
AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small ... 30 1.6
AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small ... 30 1.6
AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small... 30 1.6
AK023807-1|BAB14687.1| 1424|Homo sapiens protein ( Homo sapiens ... 30 1.6
AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein. 30 1.6
AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein. 30 1.6
AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated Sm-... 30 1.6
AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like prot... 30 1.6
AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein. 30 1.6
BC104904-1|AAI04905.1| 1944|Homo sapiens anaphase promoting comp... 29 3.6
BC104902-1|AAI04903.1| 1944|Homo sapiens anaphase promoting comp... 29 3.6
AJ278357-1|CAC19484.1| 1944|Homo sapiens Tsg24 protein protein. 29 3.6
BC033802-1|AAH33802.1| 673|Homo sapiens kinesin family member 2... 27 8.3
AK057272-1|BAB71406.1| 673|Homo sapiens protein ( Homo sapiens ... 27 8.3
AF333335-1|AAK20830.2| 673|Homo sapiens kinesin protein. 27 8.3
>L36188-1|AAA85339.1| 119|Homo sapiens small nuclear
ribonucleoprotein protein.
Length = 119
Score = 97.5 bits (232), Expect = 7e-21
Identities = 46/50 (92%), Positives = 49/50 (98%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNR 209
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNR
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNR 50
>J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantigen
small nuclear ribonucleoprotein Sm-D mRNA, complete cds.
).
Length = 119
Score = 97.5 bits (232), Expect = 7e-21
Identities = 46/50 (92%), Positives = 49/50 (98%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNR 209
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNR
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNR 50
>CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein.
Length = 119
Score = 97.5 bits (232), Expect = 7e-21
Identities = 46/50 (92%), Positives = 49/50 (98%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNR 209
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNR
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNR 50
>BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 97.5 bits (232), Expect = 7e-21
Identities = 46/50 (92%), Positives = 49/50 (98%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNR 209
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNR
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNR 50
>BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 97.5 bits (232), Expect = 7e-21
Identities = 46/50 (92%), Positives = 49/50 (98%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNR 209
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNR
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNR 50
>AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear
ribonucleoprotein Sm D1 protein.
Length = 119
Score = 95.1 bits (226), Expect = 4e-20
Identities = 45/50 (90%), Positives = 48/50 (96%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNR 209
MKLVRFLMKLSHETV IELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNR
Sbjct: 1 MKLVRFLMKLSHETVIIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNR 50
>CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT 197
M F L + V +ELKN + GT+ VD +N L + VT
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT 46
>CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT 197
M F L + V +ELKN + GT+ VD +N L + VT
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT 46
>BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 95
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT 197
M F L + V +ELKN + GT+ VD +N L + VT
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT 46
>BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonuclear
protein D homolog protein.
Length = 95
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT 197
M F L + V +ELKN + GT+ VD +N L + VT
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT 46
>AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT 197
M F L + V +ELKN + GT+ VD +N L + VT
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT 46
>AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT 197
M F L + V +ELKN + GT+ VD +N L + VT
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT 46
>AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.pha 3 (pseudogene) protein.
Length = 95
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT 197
M F L + V +ELKN + GT+ VD +N L + VT
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT 46
>AK023807-1|BAB14687.1| 1424|Homo sapiens protein ( Homo sapiens
cDNA FLJ13745 fis, clone PLACE3000244, highly similar to
PROTEIN TSG24 (MEIOTIC CHECK POINT REGULATOR). ).
Length = 1424
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 93 HETVTIELKNGSVVHGTITGVDVA--MNTHLKAVKVTL 200
H VT+EL NGSVV TI + + + T L+A+K L
Sbjct: 72 HNRVTLELSNGSVVRITIPEIATSELVQTCLQAIKFIL 109
>AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein.
Length = 95
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT 197
M F L + V +ELKN + GT+ VD +N L + VT
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT 46
>AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein.
Length = 95
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT 197
M F L + V +ELKN + GT+ VD +N L + VT
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT 46
>AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated
Sm-like protein LSm2 protein.
Length = 95
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT 197
M F L + V +ELKN + GT+ VD +N L + VT
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT 46
>AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like protein
SM-x5 protein.
Length = 95
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT 197
M F L + V +ELKN + GT+ VD +N L + VT
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT 46
>AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein.
Length = 95
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 60 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT 197
M F L + V +ELKN + GT+ VD +N L + VT
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVT 46
>BC104904-1|AAI04905.1| 1944|Homo sapiens anaphase promoting complex
subunit 1 protein.
Length = 1944
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 93 HETVTIELKNGSVVHGTITGVDVA--MNTHLKAVKVTL 200
H VT+EL NGS+V TI + + + T L+A+K L
Sbjct: 592 HNRVTLELSNGSMVRITIPEIATSELVQTCLQAIKFIL 629
>BC104902-1|AAI04903.1| 1944|Homo sapiens anaphase promoting complex
subunit 1 protein.
Length = 1944
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 93 HETVTIELKNGSVVHGTITGVDVA--MNTHLKAVKVTL 200
H VT+EL NGS+V TI + + + T L+A+K L
Sbjct: 592 HNRVTLELSNGSMVRITIPEIATSELVQTCLQAIKFIL 629
>AJ278357-1|CAC19484.1| 1944|Homo sapiens Tsg24 protein protein.
Length = 1944
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 93 HETVTIELKNGSVVHGTITGVDVA--MNTHLKAVKVTL 200
H VT+EL NGS+V TI + + + T L+A+K L
Sbjct: 592 HNRVTLELSNGSMVRITIPEIATSELVQTCLQAIKFIL 629
>BC033802-1|AAH33802.1| 673|Homo sapiens kinesin family member 2B
protein.
Length = 673
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 90 SHETVTIELKNGSVVHGTITGVDVAMN 170
SH I LK+G ++HG + VD+A N
Sbjct: 425 SHAVFQIILKSGGIMHGKFSLVDLAGN 451
>AK057272-1|BAB71406.1| 673|Homo sapiens protein ( Homo sapiens
cDNA FLJ32710 fis, clone TESTI2000699, moderately
similar to KINESIN-LIKE PROTEIN KIF2. ).
Length = 673
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 90 SHETVTIELKNGSVVHGTITGVDVAMN 170
SH I LK+G ++HG + VD+A N
Sbjct: 425 SHAVFQIILKSGGIMHGKFSLVDLAGN 451
>AF333335-1|AAK20830.2| 673|Homo sapiens kinesin protein.
Length = 673
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 90 SHETVTIELKNGSVVHGTITGVDVAMN 170
SH I LK+G ++HG + VD+A N
Sbjct: 425 SHAVFQIILKSGGIMHGKFSLVDLAGN 451
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,420,917
Number of Sequences: 237096
Number of extensions: 407633
Number of successful extensions: 1006
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 76,859,062
effective HSP length: 48
effective length of database: 65,478,454
effective search space used: 1375047534
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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