Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_B01
         (209 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear r...    85   6e-18
U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like pro...    29   0.45 
Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical pr...    28   1.0  
AF016427-1|AAB65351.1|  594|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      25   5.6  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    25   5.6  
U52001-1|AAA96093.1|  656|Caenorhabditis elegans Feminization of...    25   7.3  
U41013-3|AAA82302.1|  433|Caenorhabditis elegans Protein kinase ...    25   7.3  
U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr...    25   7.3  
J03172-1|AAA28055.1|  656|Caenorhabditis elegans protein ( C.ele...    25   7.3  
Z81142-5|CAB03507.1|  319|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U58763-1|AAK68877.2|  559|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical ...    25   9.7  

>U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 3 protein.
          Length = 126

 Score = 85.0 bits (201), Expect = 6e-18
 Identities = 40/50 (80%), Positives = 45/50 (90%)
 Frame = +3

Query: 60  MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNR 209
           MKLVRFLMKLSHETV IELKNG+ V GTI GVDVAMNTHL+AV +T+KN+
Sbjct: 1   MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNK 50


>U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like
           protein protein 4 protein.
          Length = 123

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 78  LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKN 206
           L    +  + +ELKNG   +G +   D  MN HL  V  T K+
Sbjct: 8   LKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKD 50


>Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical
           protein T10G3.6 protein.
          Length = 97

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 60  MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT 197
           M    F   L  + V +ELKN   + GT+  VD  +N  L  + V+
Sbjct: 1   MLFFSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDITVS 46


>AF016427-1|AAB65351.1|  594|Caenorhabditis elegans Hypothetical
           protein F32D1.1 protein.
          Length = 594

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 141 TITGVDVAMNTHLKAVKVTLKNR 209
           T+ G++VA N H K  +   KNR
Sbjct: 179 TLKGIEVASNPHFKKTRAPTKNR 201


>Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical
           protein F47A4.5 protein.
          Length = 1071

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = +2

Query: 128 RCPRNYNWCR--CRHEYAS 178
           RCP+ Y  CR  CRH+ +S
Sbjct: 679 RCPKGYKGCRSNCRHDCSS 697


>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 198 KLLLPPSDAYSWRH 157
           K LLPPSDA  W H
Sbjct: 585 KQLLPPSDANVWHH 598


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 190  FTAFRCVFMATSTPVIVPWTT--LPFFNSIVTVSWLSFIKNLTSFILLAYRLI 38
            F++ R V +   T   + W    + F+ + +T  WL F   +   ILL Y L+
Sbjct: 1048 FSSSRNVTVQVYTQRPLSWKKKIMEFYKAPITTYWLWFFAFIWFLILLTYNLL 1100


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 190  FTAFRCVFMATSTPVIVPWTT--LPFFNSIVTVSWLSFIKNLTSFILLAYRLI 38
            F++ R V +   T   + W    + F+ + +T  WL F   +   ILL Y L+
Sbjct: 1048 FSSSRNVTVQVYTQRPLSWKKKIMEFYKAPITTYWLWFFAFIWFLILLTYNLL 1100


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 190  FTAFRCVFMATSTPVIVPWTT--LPFFNSIVTVSWLSFIKNLTSFILLAYRLI 38
            F++ R V +   T   + W    + F+ + +T  WL F   +   ILL Y L+
Sbjct: 1035 FSSSRNVTVQVYTQRPLSWKKKIMEFYKAPITTYWLWFFAFIWFLILLTYNLL 1087


>U52001-1|AAA96093.1|  656|Caenorhabditis elegans Feminization of xx
           and xo animalsprotein 1, isoform a protein.
          Length = 656

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 96  ETVTIELKNGSVVHGTITGVDVAMNTHL 179
           E V I LK+GSV+   I GVD  M   L
Sbjct: 203 EVVKILLKHGSVLMKDIQGVDPLMGAAL 230


>U41013-3|AAA82302.1|  433|Caenorhabditis elegans Protein kinase
           protein 26 protein.
          Length = 433

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 72  RFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLK 203
           R   +L H+ +TI  K G    G ++   +     +K V+V +K
Sbjct: 120 RQFWELEHDQITIHKKLGEGAFGEVSSGVMKFKKGMKTVQVAIK 163


>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical
           protein C25F6.3 protein.
          Length = 1059

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 170 IHGDIDTSYSSVDNAAVFQLNSHRFVAELH 81
           + G  +T+  SV++  +   N HR++  LH
Sbjct: 496 VAGVAETTVESVNDGKIAAWNMHRYIQSLH 525


>J03172-1|AAA28055.1|  656|Caenorhabditis elegans protein (
           C.elegans fem-1 gene,complete cds. ).
          Length = 656

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 96  ETVTIELKNGSVVHGTITGVDVAMNTHL 179
           E V I LK+GSV+   I GVD  M   L
Sbjct: 203 EVVKILLKHGSVLMKDIQGVDPLMGAAL 230


>Z81142-5|CAB03507.1|  319|Caenorhabditis elegans Hypothetical
           protein ZK1037.8 protein.
          Length = 319

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -2

Query: 142 VPWTTLPFFNSIVTVSWLSFIKNLTSFILLAYRLIFI 32
           VP  +L F  +     W+    NLT+++L    ++F+
Sbjct: 173 VPDKSLIFVINFYEKGWVKLAGNLTTYVLFVEIIVFV 209


>Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical
           protein F08A10.2 protein.
          Length = 326

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 172 VFMATSTPVIVPWTTLPFFNSIVTV--SWLSFIKNLTSFILLAYRLIFI 32
           VF++++T +I   T +P    IV +  S ++ I+N   F+L  YR I +
Sbjct: 81  VFISSNTKIIT--TAVPILILIVYLMSSVITSIQNSLLFLLALYRFIIV 127


>U58763-1|AAK68877.2|  559|Caenorhabditis elegans Hypothetical
           protein F10C5.2 protein.
          Length = 559

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 83  EAQPRNGDY*VEKRQRCPRNYNWCRCRH-EYASEGGK 190
           ++ PR+G++  E R R PR     R R  EY  + G+
Sbjct: 477 DSTPRHGNFQSEHRPRMPRTEQIYRSRRVEYDVKNGR 513


>AF024492-4|AAF98617.1|  848|Caenorhabditis elegans Hypothetical
           protein F14F9.3 protein.
          Length = 848

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 74  IFDEAQPRNGDY*VEKRQRCPRNYNWCR 157
           +FDE   +N      + + CP  Y+WCR
Sbjct: 577 LFDEIVEKNEKK--TQNRSCPCGYSWCR 602


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,425,550
Number of Sequences: 27780
Number of extensions: 71500
Number of successful extensions: 279
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)