Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_A24
(519 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M13934-2|AAB59505.1| 151|Homo sapiens ribosomal protein S14 pro... 199 5e-51
BC091474-1|AAH91474.1| 151|Homo sapiens ribosomal protein S14 p... 199 5e-51
BC020515-1|AAH20515.1| 151|Homo sapiens ribosomal protein S14 p... 199 5e-51
BC006784-1|AAH06784.1| 151|Homo sapiens ribosomal protein S14 p... 199 5e-51
BC003401-1|AAH03401.1| 151|Homo sapiens ribosomal protein S14 p... 199 5e-51
BC001126-1|AAH01126.1| 151|Homo sapiens ribosomal protein S14 p... 199 5e-51
BC072682-1|AAH72682.1| 170|Homo sapiens similar to ribosomal pr... 187 2e-47
X74301-1|CAA52354.1| 1130|Homo sapiens (MHC) class II transactiv... 31 2.4
U18288-1|AAA88862.1| 884|Homo sapiens MHC class II transactivat... 31 2.4
U18259-1|AAA88861.1| 1130|Homo sapiens MHC class II transactivat... 31 2.4
EF064747-1|ABK41930.1| 1130|Homo sapiens class II, major histoco... 31 2.4
AY699071-1|AAU06586.1| 1107|Homo sapiens CIITA IV protein. 31 2.4
AF410154-1|AAL04118.1| 932|Homo sapiens MHC2TA protein. 31 2.4
AL357713-1|CAH73433.1| 1566|Homo sapiens arginine-glutamic acid ... 31 3.2
AL356072-3|CAH70517.1| 1298|Homo sapiens arginine-glutamic acid ... 31 3.2
AL356072-2|CAH70516.1| 1566|Homo sapiens arginine-glutamic acid ... 31 3.2
AL096855-2|CAI19209.1| 1298|Homo sapiens arginine-glutamic acid ... 31 3.2
AL096855-1|CAI19208.1| 1566|Homo sapiens arginine-glutamic acid ... 31 3.2
AF118275-1|AAD27584.1| 995|Homo sapiens atrophin-related protei... 31 3.2
AF041104-1|AAC28264.1| 1012|Homo sapiens atrophin-1 like protein... 31 3.2
AF016005-1|AAC31120.1| 1012|Homo sapiens atrophin-1 related prot... 31 3.2
AB036737-1|BAA95898.1| 1566|Homo sapiens RERE protein. 31 3.2
AB007927-1|BAA32303.3| 1552|Homo sapiens KIAA0458 protein protein. 31 3.2
>M13934-2|AAB59505.1| 151|Homo sapiens ribosomal protein S14
protein.
Length = 151
Score = 199 bits (485), Expect = 5e-51
Identities = 99/140 (70%), Positives = 106/140 (75%)
Frame = +3
Query: 33 MAPRKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 212
MAPRK K KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 213 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 392
KVKADRDE+SPYAAMLAAQDVA++CK LGITALHIKLRA AQ
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 393 XXXMKIGRIEDVTPVPSDST 452
MKIGRIEDVTP+PSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>BC091474-1|AAH91474.1| 151|Homo sapiens ribosomal protein S14
protein.
Length = 151
Score = 199 bits (485), Expect = 5e-51
Identities = 99/140 (70%), Positives = 106/140 (75%)
Frame = +3
Query: 33 MAPRKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 212
MAPRK K KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 213 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 392
KVKADRDE+SPYAAMLAAQDVA++CK LGITALHIKLRA AQ
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 393 XXXMKIGRIEDVTPVPSDST 452
MKIGRIEDVTP+PSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>BC020515-1|AAH20515.1| 151|Homo sapiens ribosomal protein S14
protein.
Length = 151
Score = 199 bits (485), Expect = 5e-51
Identities = 99/140 (70%), Positives = 106/140 (75%)
Frame = +3
Query: 33 MAPRKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 212
MAPRK K KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 213 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 392
KVKADRDE+SPYAAMLAAQDVA++CK LGITALHIKLRA AQ
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 393 XXXMKIGRIEDVTPVPSDST 452
MKIGRIEDVTP+PSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>BC006784-1|AAH06784.1| 151|Homo sapiens ribosomal protein S14
protein.
Length = 151
Score = 199 bits (485), Expect = 5e-51
Identities = 99/140 (70%), Positives = 106/140 (75%)
Frame = +3
Query: 33 MAPRKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 212
MAPRK K KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 213 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 392
KVKADRDE+SPYAAMLAAQDVA++CK LGITALHIKLRA AQ
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 393 XXXMKIGRIEDVTPVPSDST 452
MKIGRIEDVTP+PSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>BC003401-1|AAH03401.1| 151|Homo sapiens ribosomal protein S14
protein.
Length = 151
Score = 199 bits (485), Expect = 5e-51
Identities = 99/140 (70%), Positives = 106/140 (75%)
Frame = +3
Query: 33 MAPRKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 212
MAPRK K KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 213 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 392
KVKADRDE+SPYAAMLAAQDVA++CK LGITALHIKLRA AQ
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 393 XXXMKIGRIEDVTPVPSDST 452
MKIGRIEDVTP+PSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>BC001126-1|AAH01126.1| 151|Homo sapiens ribosomal protein S14
protein.
Length = 151
Score = 199 bits (485), Expect = 5e-51
Identities = 99/140 (70%), Positives = 106/140 (75%)
Frame = +3
Query: 33 MAPRKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 212
MAPRK K KEE ++LGPQ GE VFGV HIFASFNDTFVHVTDLSG+ETI RVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 213 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 392
KVKADRDE+SPYAAMLAAQDVA++CK LGITALHIKLRA AQ
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 393 XXXMKIGRIEDVTPVPSDST 452
MKIGRIEDVTP+PSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>BC072682-1|AAH72682.1| 170|Homo sapiens similar to ribosomal
protein S14 protein.
Length = 170
Score = 187 bits (456), Expect = 2e-47
Identities = 93/140 (66%), Positives = 101/140 (72%)
Frame = +3
Query: 33 MAPRKNKVAKEEVQVTLGPQHLVGEIVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGM 212
MAP K K KEE + LGPQ GE VFGV HIFASFNDTFVHVTDLSG++TI RVTGGM
Sbjct: 1 MAPGKGKEKKEEQVINLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKQTICRVTGGM 60
Query: 213 KVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQXXXXXXX 392
KVKADRDE+SPYAAML QDVA++CK LGI ALHI+LRA AQ
Sbjct: 61 KVKADRDESSPYAAMLTTQDVAQRCKELGIIALHIQLRATGGNRTKTLGPGAQSALRALA 120
Query: 393 XXXMKIGRIEDVTPVPSDST 452
MKIGRIEDVTP+PSDST
Sbjct: 121 CSGMKIGRIEDVTPIPSDST 140
>X74301-1|CAA52354.1| 1130|Homo sapiens (MHC) class II
transactivator protein.
Length = 1130
Score = 31.1 bits (67), Expect = 2.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 114 ILSHPPSAGDQESPEPPLLQLCFFSGPWLSL 22
++ HPP A + E P L CF WL+L
Sbjct: 694 LVQHPPRAAESELAFPSFLLQCFLGALWLAL 724
>U18288-1|AAA88862.1| 884|Homo sapiens MHC class II transactivator
CIITA protein.
Length = 884
Score = 31.1 bits (67), Expect = 2.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 114 ILSHPPSAGDQESPEPPLLQLCFFSGPWLSL 22
++ HPP A + E P L CF WL+L
Sbjct: 646 LVQHPPRAAESELAFPSFLLQCFLGALWLAL 676
>U18259-1|AAA88861.1| 1130|Homo sapiens MHC class II transactivator
CIITA protein.
Length = 1130
Score = 31.1 bits (67), Expect = 2.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 114 ILSHPPSAGDQESPEPPLLQLCFFSGPWLSL 22
++ HPP A + E P L CF WL+L
Sbjct: 694 LVQHPPRAAESELAFPSFLLQCFLGALWLAL 724
>EF064747-1|ABK41930.1| 1130|Homo sapiens class II, major
histocompatibility complex, transactivator protein.
Length = 1130
Score = 31.1 bits (67), Expect = 2.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 114 ILSHPPSAGDQESPEPPLLQLCFFSGPWLSL 22
++ HPP A + E P L CF WL+L
Sbjct: 694 LVQHPPRAAESELAFPSFLLQCFLGALWLAL 724
>AY699071-1|AAU06586.1| 1107|Homo sapiens CIITA IV protein.
Length = 1107
Score = 31.1 bits (67), Expect = 2.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 114 ILSHPPSAGDQESPEPPLLQLCFFSGPWLSL 22
++ HPP A + E P L CF WL+L
Sbjct: 671 LVQHPPRAAESELAFPSFLLQCFLGALWLAL 701
>AF410154-1|AAL04118.1| 932|Homo sapiens MHC2TA protein.
Length = 932
Score = 31.1 bits (67), Expect = 2.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 114 ILSHPPSAGDQESPEPPLLQLCFFSGPWLSL 22
++ HPP A + E P L CF WL+L
Sbjct: 694 LVQHPPRAAESELAFPSFLLQCFLGALWLAL 724
>AL357713-1|CAH73433.1| 1566|Homo sapiens arginine-glutamic acid
dipeptide (RE) repeats protein.
Length = 1566
Score = 30.7 bits (66), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 126 VPPRILSHPPSAGDQESPEPPLLQLCFFSG 37
+PP SHPP+ Q +P+PP Q F G
Sbjct: 1013 LPPPPASHPPTGLHQVAPQPPFAQHPFVPG 1042
>AL356072-3|CAH70517.1| 1298|Homo sapiens arginine-glutamic acid
dipeptide (RE) repeats protein.
Length = 1298
Score = 30.7 bits (66), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 126 VPPRILSHPPSAGDQESPEPPLLQLCFFSG 37
+PP SHPP+ Q +P+PP Q F G
Sbjct: 745 LPPPPASHPPTGLHQVAPQPPFAQHPFVPG 774
>AL356072-2|CAH70516.1| 1566|Homo sapiens arginine-glutamic acid
dipeptide (RE) repeats protein.
Length = 1566
Score = 30.7 bits (66), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 126 VPPRILSHPPSAGDQESPEPPLLQLCFFSG 37
+PP SHPP+ Q +P+PP Q F G
Sbjct: 1013 LPPPPASHPPTGLHQVAPQPPFAQHPFVPG 1042
>AL096855-2|CAI19209.1| 1298|Homo sapiens arginine-glutamic acid
dipeptide (RE) repeats protein.
Length = 1298
Score = 30.7 bits (66), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 126 VPPRILSHPPSAGDQESPEPPLLQLCFFSG 37
+PP SHPP+ Q +P+PP Q F G
Sbjct: 745 LPPPPASHPPTGLHQVAPQPPFAQHPFVPG 774
>AL096855-1|CAI19208.1| 1566|Homo sapiens arginine-glutamic acid
dipeptide (RE) repeats protein.
Length = 1566
Score = 30.7 bits (66), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 126 VPPRILSHPPSAGDQESPEPPLLQLCFFSG 37
+PP SHPP+ Q +P+PP Q F G
Sbjct: 1013 LPPPPASHPPTGLHQVAPQPPFAQHPFVPG 1042
>AF118275-1|AAD27584.1| 995|Homo sapiens atrophin-related protein
ARP protein.
Length = 995
Score = 30.7 bits (66), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 126 VPPRILSHPPSAGDQESPEPPLLQLCFFSG 37
+PP SHPP+ Q +P+PP Q F G
Sbjct: 442 LPPPPASHPPTGLHQVAPQPPFAQHPFVPG 471
>AF041104-1|AAC28264.1| 1012|Homo sapiens atrophin-1 like protein
protein.
Length = 1012
Score = 30.7 bits (66), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 126 VPPRILSHPPSAGDQESPEPPLLQLCFFSG 37
+PP SHPP+ Q +P+PP Q F G
Sbjct: 459 LPPPPASHPPTGLHQVAPQPPFAQHPFVPG 488
>AF016005-1|AAC31120.1| 1012|Homo sapiens atrophin-1 related protein
protein.
Length = 1012
Score = 30.7 bits (66), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 126 VPPRILSHPPSAGDQESPEPPLLQLCFFSG 37
+PP SHPP+ Q +P+PP Q F G
Sbjct: 459 LPPPPASHPPTGLHQVAPQPPFAQHPFVPG 488
>AB036737-1|BAA95898.1| 1566|Homo sapiens RERE protein.
Length = 1566
Score = 30.7 bits (66), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 126 VPPRILSHPPSAGDQESPEPPLLQLCFFSG 37
+PP SHPP+ Q +P+PP Q F G
Sbjct: 1013 LPPPPASHPPTGLHQVAPQPPFAQHPFVPG 1042
>AB007927-1|BAA32303.3| 1552|Homo sapiens KIAA0458 protein protein.
Length = 1552
Score = 30.7 bits (66), Expect = 3.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 126 VPPRILSHPPSAGDQESPEPPLLQLCFFSG 37
+PP SHPP+ Q +P+PP Q F G
Sbjct: 999 LPPPPASHPPTGLHQVAPQPPFAQHPFVPG 1028
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,474,402
Number of Sequences: 237096
Number of extensions: 1898489
Number of successful extensions: 6375
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 5950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6372
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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