Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_A17
(495 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 232 2e-62
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 232 2e-62
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 232 2e-62
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 3.6
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 26 3.6
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 26 3.6
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 26 3.6
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 25 4.7
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 6.3
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|... 25 8.3
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 232 bits (567), Expect = 2e-62
Identities = 105/154 (68%), Positives = 128/154 (83%)
Frame = +1
Query: 34 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 213
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 214 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 393
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 394 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGA 495
GDRG L R+SGN+ ++GH+ D +TRVKLPSGA
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGA 153
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 232 bits (567), Expect = 2e-62
Identities = 105/154 (68%), Positives = 128/154 (83%)
Frame = +1
Query: 34 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 213
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 214 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 393
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 394 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGA 495
GDRG L R+SGN+ ++GH+ D +TRVKLPSGA
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGA 153
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 232 bits (567), Expect = 2e-62
Identities = 105/154 (68%), Positives = 128/154 (83%)
Frame = +1
Query: 34 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 213
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 214 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 393
V FR+PY ++T E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119
Query: 394 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGA 495
GDRG L R+SGN+ ++GH+ D +TRVKLPSGA
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGA 153
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.8 bits (54), Expect = 3.6
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = -2
Query: 446 PITVAKLPEARASRPRSPIFSSKLHTIV--PSGIA---PTGITLPTSRVAFLPQ*TN*PV 282
P +A LP R+ FSSK ++ P +A IT P+S V +PQ T+
Sbjct: 272 PWFIADLPTHSRLPSRTSSFSSKHRSVTFSPPDLAILFDPSITSPSSSVGQIPQPTDHSA 331
Query: 281 *RPSGAMNSS 252
PS M+ S
Sbjct: 332 LSPSKPMSIS 341
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.8 bits (54), Expect = 3.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 457 PDCDL*LWQNCQRREPVVLDHPSFLPNY 374
PD + LW + RE + D+P FL Y
Sbjct: 86 PDYEYVLWTDESMREFIATDYPWFLTQY 113
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 3.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 300 LWQESNSRSWQCNACGCYA 356
LW++ CNACG YA
Sbjct: 429 LWRKDRHGQTVCNACGLYA 447
Score = 24.6 bits (51), Expect = 8.3
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 300 LWQESNSR-SWQCNACGCYA*RY 365
LW+ ++ + ++ CNACG Y +Y
Sbjct: 375 LWRRTSDKLNFLCNACGLYNKQY 397
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 3.6
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +3
Query: 300 LWQESNSRSWQCNACGCY 353
LW+ S CNACG Y
Sbjct: 22 LWRRGPDNSLLCNACGLY 39
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 300 LWQESNSRSWQCNACGCY 353
LW+ S + CNACG Y
Sbjct: 182 LWRRDESGNPICNACGLY 199
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 4.7
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = -1
Query: 489 RWKLYSRTFGVRIVTYNCGKIARGASQSSSITHLFFQITHNCTFRHSTHRHYIANF*SCF 310
RW L+ GV +T++ K+ A ++ F I +HS H N CF
Sbjct: 106 RWLLHRIPGGV--ITWSTYKLFDEAETRANYPVRGFDIFMKHATKHSCH----FNILKCF 159
Query: 309 LATVNKLTSIKTFWSNEQFFARLELV 232
L + L++ SN + LELV
Sbjct: 160 LKLLMSLSAKLAVSSNSSTVSSLELV 185
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 55 QRKGAGSVFVSHTKKRKGAPKLRSLD 132
+R+G+ +HTK+ K APK D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192
>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 24.6 bits (51), Expect = 8.3
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 347 VLCLKVQLCVIWKKRWVIEDDWLAP-LAILPQL 442
V+ L+V LC+I W + +L P L+I P+L
Sbjct: 66 VMILRVPLCIISVTLWFLWSCFLKPILSIQPKL 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,852
Number of Sequences: 5004
Number of extensions: 47078
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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