Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_A16
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 231 5e-62
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 32 0.057
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe... 31 0.099
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce... 29 0.40
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 1.6
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 25 4.9
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 25 4.9
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 25 4.9
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 25 6.5
SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|... 25 8.6
>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 231 bits (565), Expect = 5e-62
Identities = 113/159 (71%), Positives = 128/159 (80%), Gaps = 5/159 (3%)
Frame = +3
Query: 9 EMGRLITKAENPIVLYVSGGNTQIIAYSRKRYRIFGETIDMAVGNCLDRFARVFKMSNDP 188
EMGR IT A+NP+VLYVSGGNTQ+IAYS K+YRIFGET+D+A+GNCLDRFAR+ +SN P
Sbjct: 123 EMGREITGAQNPVVLYVSGGNTQVIAYSEKKYRIFGETLDIAIGNCLDRFARIIGLSNAP 182
Query: 189 SPGYNIEQAAKKGRHFYPLPYTVKGMDVSFSGILSHVTGADDSLLRDYN-----VEDLCY 353
SPGYNI Q AKKG+ F LPYTVKGMD SFSG+LS V A LL N +DLCY
Sbjct: 183 SPGYNIMQEAKKGKRFIELPYTVKGMDCSFSGLLSGVEAAATELLDPKNPSSVTKQDLCY 242
Query: 354 SLQETIFAMLVEITERAMSHCNSNEVLIVGGVGCNERLQ 470
SLQET FAMLVEITERAM+H ++ VLIVGGVGCNERLQ
Sbjct: 243 SLQETGFAMLVEITERAMAHIRADSVLIVGGVGCNERLQ 281
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 31.9 bits (69), Expect = 0.057
Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 16/156 (10%)
Frame = +3
Query: 51 LYVSGGNTQII-AYSRKRYRIFGETIDMAVGNCLDRFARVFKMS-NDPSPGYNIEQAAKK 224
+ VSGG+T ++ + S + I T D+AVG+ LD+ A+ + ++ P +EQ A
Sbjct: 178 ILVSGGHTMLVYSNSLLNHEIIVTTSDIAVGDYLDKCAKYLGIPWDNEMPAAALEQFASP 237
Query: 225 --GRHFY----PLPYT----VKGMDVSFSGILSHVTG-ADDSLLRDYNVEDLCYSLQETI 371
Y P+P V SFSG+ S+ + L + Y LQ
Sbjct: 238 EINSTSYSLKPPIPLNTREKVHSASFSFSGLESYACRIIRKTPLNLSEKKFFAYQLQYAA 297
Query: 372 FAMLVEITERAMSHCNSNEV---LIVGGVGCNERLQ 470
F + + T A+ + ++V + GGV NE L+
Sbjct: 298 FQHICQKTLLALKRLDLSKVKYLVCSGGVARNELLK 333
>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 31.1 bits (67), Expect = 0.099
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 366 SLEENSKDLQHYNRVTMNHRLQLHVTVYQKNSHPYL 259
+++E+ D Q +N T NH+ + H YQ + P++
Sbjct: 3 NVQEHDPDTQEHNNETQNHKQEDHSNSYQTRTIPFI 38
>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 29.1 bits (62), Expect = 0.40
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 70 IHKLLLTPEKDIGSLEKP 123
IHKLLL+ EKD+G ++P
Sbjct: 242 IHKLLLSSEKDVGHTDEP 259
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 226 PFLAACSIL*PGLGSFDILKTLANLSKQL 140
PF+ A + L PG+ ++ LAN SKQL
Sbjct: 245 PFMTAVATLYPGVELENVKPLLANFSKQL 273
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 4.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 189 SPGYNIEQAAKKGRHFYPLPYTVKGMDVSFSG 284
SP Y+ + AKK F PLP+ +G + G
Sbjct: 383 SPSYSPVKLAKKFSSFNPLPFENEGYTLDVLG 414
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.4 bits (53), Expect = 4.9
Identities = 16/76 (21%), Positives = 38/76 (50%)
Frame = +3
Query: 180 NDPSPGYNIEQAAKKGRHFYPLPYTVKGMDVSFSGILSHVTGADDSLLRDYNVEDLCYSL 359
+ P+P ++ A + R ++P P +K ++ + + ++ V + S+ V+ LC SL
Sbjct: 178 HSPAPLSTMQTALMRLRTYHPSPIILKPVEQAVNHAITLVNTSPSSV-----VDALCRSL 232
Query: 360 QETIFAMLVEITERAM 407
E ++ E + ++
Sbjct: 233 AELCLGLVQEAIDASI 248
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 4.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -1
Query: 141 YPQPYLWFLQRSYIFFWSKQ 82
Y PY+ L YI+ W+K+
Sbjct: 251 YNSPYIITLHNQYIYIWNKE 270
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 6.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -1
Query: 147 NNYPQPYLWFLQRSYIFFWSKQ 82
+NY +PY + R Y + W +Q
Sbjct: 65 DNYKRPYAVWKDRGYAYSWGQQ 86
>SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 177
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 349 QRSSTL*SRNNESSAPVTCDSI 284
Q STL R +SS PV+CD++
Sbjct: 145 QEESTLYIRALKSSEPVSCDTV 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,571
Number of Sequences: 5004
Number of extensions: 47978
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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