Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_A16
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0025 - 5710833-5711234,5711373-5711528,5714615-5715382          240   5e-64
12_02_0360 - 17966857-17966865,17966866-17966954,17967276-179673...    36   0.014
04_04_0108 - 22830485-22830706,22830817-22830954,22831091-228313...    28   5.0  
12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,575...    27   8.7  

>05_02_0025 - 5710833-5711234,5711373-5711528,5714615-5715382
          Length = 441

 Score =  240 bits (587), Expect = 5e-64
 Identities = 115/156 (73%), Positives = 129/156 (82%), Gaps = 2/156 (1%)
 Frame = +3

Query: 9   EMGRLITKAENPIVLYVSGGNTQIIAYSRKRYRIFGETIDMAVGNCLDRFARVFKMSNDP 188
           EMGR +T A +P+VLYVSGGNTQ+IAYS  RYRIFGETID+AVGNCLDRFARV ++SNDP
Sbjct: 189 EMGRAVTGAVDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDRFARVLELSNDP 248

Query: 189 SPGYNIEQAAKKGRHFYPLPYTVKGMDVSFSGILSHV--TGADDSLLRDYNVEDLCYSLQ 362
           SPGYNIEQ AKKG  F  LPY VKGMDVSFSGILS +  T  +     +    DLCYSLQ
Sbjct: 249 SPGYNIEQLAKKGEKFIDLPYVVKGMDVSFSGILSFIEATAIEKLKNNECTPADLCYSLQ 308

Query: 363 ETIFAMLVEITERAMSHCNSNEVLIVGGVGCNERLQ 470
           ET+FAMLVEITERAM+HC+S +VLIVGGVGCNERLQ
Sbjct: 309 ETLFAMLVEITERAMAHCDSKDVLIVGGVGCNERLQ 344


>12_02_0360 -
           17966857-17966865,17966866-17966954,17967276-17967399,
           17967639-17967717,17968267-17968352,17968471-17968661,
           17970496-17970560,17971192-17971282,17971705-17971801,
           17971883-17972128,17972248-17972505
          Length = 444

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 45  IVLYVSGG-NTQIIAYSRKRYRIFGETIDMAVGNCLDRFARVFKMSNDPSPGYNIEQAAK 221
           + L +SGG N  ++A+   +Y   G TID A+G   D+ AR   +      G  +EQ A 
Sbjct: 247 LALLISGGHNLLVLAHGLGQYVQLGTTIDDAIGEAYDKSARWLGLDMRKGGGPALEQLAL 306

Query: 222 KG 227
           +G
Sbjct: 307 EG 308


>04_04_0108 -
           22830485-22830706,22830817-22830954,22831091-22831355,
           22831490-22831725,22831906-22832421,22834960-22835300,
           22835453-22835459
          Length = 574

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +3

Query: 213 AAKKGRHFYPLPYTVKGMDVSFSGILSH--VTGADDSLLRDYNVEDLCYSLQETIFAMLV 386
           AAK  R F   PY  K M+ +  GIL +  ++G   S     NV D+C +++  +   LV
Sbjct: 161 AAKLARAFRVSPYLRKQMEATRDGILQNKGISGVYTSNGDILNVGDVCRNIR--LARTLV 218

Query: 387 EITER 401
            + E+
Sbjct: 219 AVAEK 223


>12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,
            5751816-5751993
          Length = 1572

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 24   ITKAENPIVLYVSGGNTQIIAYSRKRYRIFGETIDM 131
            +TK  + +  YVSGG  + +  SR   RI   TID+
Sbjct: 1367 LTKFGSSVNPYVSGGEEEHLVDSRSSLRISSLTIDL 1402


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,872,188
Number of Sequences: 37544
Number of extensions: 292420
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)