Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_A16
(507 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 23 2.4
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 22 3.2
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 22 3.2
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 4.2
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 22 4.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 5.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 5.6
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 21 7.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.7
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 21 9.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.7
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 21 9.7
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 21 9.7
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 22.6 bits (46), Expect = 2.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 8 GNGQIDNES*KSNCAICQWWQYTNYCLL 91
GN +E+ S+C +CQ + Y Y L
Sbjct: 181 GNEHTYSETGPSHCVVCQNFFYQIYATL 208
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 22.2 bits (45), Expect = 3.2
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +3
Query: 48 VLYVSGGNTQIIAYSRKRYRIFGETIDMAVGNCLDRFARVFKMSNDPSPGYNI 206
+L G +T + S R +DM+V C DR A K + P + +
Sbjct: 21 ILDTCGRDTYALNQSLHFVRASLSNLDMSVLECADRSAPRVKKTASAGPIFGV 73
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 22.2 bits (45), Expect = 3.2
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +3
Query: 48 VLYVSGGNTQIIAYSRKRYRIFGETIDMAVGNCLDRFARVFKMSNDPSPGYNI 206
+L G +T + S R +DM+V C DR A K + P + +
Sbjct: 111 ILDTCGRDTYALNQSLHFVRASLSNLDMSVLECADRSAPRVKKTASAGPIFGV 163
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.8 bits (44), Expect = 4.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 468 GDARCSPLRRLSEPHWNYNGT*LSPLFRR 382
GD++CS +R E NY+ + +F R
Sbjct: 270 GDSKCSLCQRRFEEQGNYSCLKVDLIFTR 298
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 21.8 bits (44), Expect = 4.2
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = -2
Query: 242 RVEVSSFFSCLLYIVAWT 189
R+ ++ C LY+++WT
Sbjct: 271 RIAKAAITICFLYVLSWT 288
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 5.6
Identities = 6/18 (33%), Positives = 15/18 (83%)
Frame = -2
Query: 233 VSSFFSCLLYIVAWTRVI 180
+ S+F+C++++VA + V+
Sbjct: 257 IGSYFNCIMFMVASSVVL 274
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 5.6
Identities = 6/18 (33%), Positives = 15/18 (83%)
Frame = -2
Query: 233 VSSFFSCLLYIVAWTRVI 180
+ S+F+C++++VA + V+
Sbjct: 257 IGSYFNCIMFMVASSVVL 274
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 5.6
Identities = 6/18 (33%), Positives = 15/18 (83%)
Frame = -2
Query: 233 VSSFFSCLLYIVAWTRVI 180
+ S+F+C++++VA + V+
Sbjct: 257 IGSYFNCIMFMVASSVVL 274
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 5.6
Identities = 6/18 (33%), Positives = 15/18 (83%)
Frame = -2
Query: 233 VSSFFSCLLYIVAWTRVI 180
+ S+F+C++++VA + V+
Sbjct: 325 IGSYFNCIMFMVASSVVL 342
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 21.0 bits (42), Expect = 7.3
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = -1
Query: 321 TMNHRLQLHVTVYQKNSHPYLLQYMAEGR 235
T+ H +Q H + K Y+L E R
Sbjct: 1084 TLKHIIQTHGEMTDKQVEAYMLSLRDENR 1112
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.7
Identities = 6/18 (33%), Positives = 15/18 (83%)
Frame = -2
Query: 233 VSSFFSCLLYIVAWTRVI 180
+ S+F+C++++VA + V+
Sbjct: 257 LGSYFNCIMFMVASSVVL 274
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.7
Identities = 6/18 (33%), Positives = 15/18 (83%)
Frame = -2
Query: 233 VSSFFSCLLYIVAWTRVI 180
+ S+F+C++++VA + V+
Sbjct: 257 LGSYFNCIMFMVASSVVL 274
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.6 bits (41), Expect = 9.7
Identities = 6/18 (33%), Positives = 15/18 (83%)
Frame = -2
Query: 233 VSSFFSCLLYIVAWTRVI 180
+ S+F+C++++VA + V+
Sbjct: 257 LGSYFNCIMFMVASSVVL 274
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 20.6 bits (41), Expect = 9.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -1
Query: 342 LQHYNRVTMNHRLQLHV 292
+QHYN +H + HV
Sbjct: 68 IQHYNVDEYSHTVDFHV 84
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.6 bits (41), Expect = 9.7
Identities = 6/18 (33%), Positives = 15/18 (83%)
Frame = -2
Query: 233 VSSFFSCLLYIVAWTRVI 180
+ S+F+C++++VA + V+
Sbjct: 325 LGSYFNCIMFMVASSVVL 342
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 20.6 bits (41), Expect = 9.7
Identities = 10/54 (18%), Positives = 23/54 (42%)
Frame = +3
Query: 150 DRFARVFKMSNDPSPGYNIEQAAKKGRHFYPLPYTVKGMDVSFSGILSHVTGAD 311
+R + + ++P P ++ FY + V + +S+ +L+ AD
Sbjct: 209 ERHKKYYPCCDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYLSVLAFYLPAD 262
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 20.6 bits (41), Expect = 9.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 141 YPQPYLWFLQRSYIFFWSKQ*FVYCHH*HIAQLDFQLSLS 22
YP LQ+ I +++Q F Y H Q QL+LS
Sbjct: 442 YPSTSSHILQQPSIRTYTQQQFPYVHDTLQIQPQEQLTLS 481
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,921
Number of Sequences: 438
Number of extensions: 3663
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -