Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_A15
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    27   2.0  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   2.0  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    27   2.7  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    26   3.5  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    26   3.5  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   6.2  

>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 108 LYTADVRPIIIYVCVVWSKKAQQQSVCTRLATVQRMASI 224
           LYT  +RP+  Y  +++ +   Q S+  RL T+ R  +I
Sbjct: 534 LYTPALRPLRPYAQIIYFRPPPQASLVGRLRTICRNENI 572


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 226 LIEAILCTVANRVQTDCCCAFLDQTTQTY-IIMGL 125
           L+  I CT+   +    C  FLD+T+ +Y +IMGL
Sbjct: 57  LVRKIDCTIFPVMCLVYCIQFLDKTSNSYAVIMGL 91


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
 Frame = +3

Query: 279 DTPPSTCRKGGEVKDAQYVRPQEDIMDIPVH--EISLRL--GDRVLGMIQM 419
           D+  STC +  E+   Q +   E+  D PVH  ++S +L  G++VL +++M
Sbjct: 824 DSFRSTCSRVAELLQMQPLEGTENPTDKPVHVMKLSGKLVNGEKVLALVKM 874


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +1

Query: 238 MTAPEAALDALLNLTPLHLHVEKVGRL--RMHSMYALR 345
           M   +   D LLN    H+H  K G +    HSMY ++
Sbjct: 138 MVCHDPMCDKLLNFINGHIHCRKCGYIFCNFHSMYQIK 175


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 80  GVKSQANYMALYSRCQTHNNIRLCSLVQKGTA 175
           G    A+  A Y R + HN + +C   + GTA
Sbjct: 244 GSTLSADVFARYHRARNHNTLYICGTDEYGTA 275


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -2

Query: 546 ILDPSVNHYKLLSLNIISLFNQESRGGISIS*HILRFVSGIITSV 412
           ILD   NH  + S++ ++   +  +GG+ +  H + F+    TS+
Sbjct: 659 ILDEPTNHLDMESMDALTRAVKRFQGGVILVSHDVDFLDKTCTSI 703


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,794
Number of Sequences: 5004
Number of extensions: 60157
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)