Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_A15
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    26   0.31 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   3.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   6.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.9  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   8.9  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 50  GSVVEWLESAGVKSQANYMALYSRCQTHNNIRLCSLVQKGTAAVG 184
           G +  W+ + G  S A  + +  RC   NN ++ S V +   AVG
Sbjct: 349 GMMQAWMTALGTASSAATLPITFRCLEENN-KIDSRVTRFVVAVG 392



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = -1

Query: 229 SLIEAILCTVANRVQTDCCCAFLDQTTQTYIIMGLTSAV*SHIISL 92
           S ++AIL  + N V  +   A   Q   TY+   + +   S I  +
Sbjct: 182 STLDAILDIIRNMVPENLVQACFQQAQTTYVTKEVATGTASEITQI 227


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 524 TISCFPSTLSHCLTKSP 474
           T +CF  +L +C+ K P
Sbjct: 169 TTACFEPSLDYCVVKIP 185


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 310  PPFLHVDGGVSDLAVHPEPLQGRSW 236
            PP  H +G +    +H EP+    W
Sbjct: 1135 PPNTHSNGIIQGYKLHYEPILADMW 1159


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -1

Query: 310  PPFLHVDGGVSDLAVHPEPLQGRSW 236
            PP  H +G +    +H EP+    W
Sbjct: 1131 PPNTHSNGIIQGYKLHYEPILADMW 1155


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 195 IGCKPTAAVPFWTKLHRRILLW 130
           I C     + FW+ +   ILLW
Sbjct: 385 IQCLTVVCLAFWSFIVSTILLW 406


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -2

Query: 270 QCIQSRFRGGHGSH 229
           QCI SR  G H  H
Sbjct: 50  QCISSRRNGRHNVH 63


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 513 LSLNIISLFNQESRGGISIS*HIL 442
           + L++I  F+++  GGI +  HI+
Sbjct: 115 IGLSLIKGFDKKQGGGIELISHII 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,590
Number of Sequences: 438
Number of extensions: 4392
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)