Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_A12
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    26   2.4  
SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|...    26   3.1  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    26   3.1  
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    26   3.1  

>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 280 KKISYHQLLNIISENYNLGTIKNNILLAKNEEVC 381
           K++  H+   IIS+N  L TI   +L    E+VC
Sbjct: 44  KEMEEHETTPIISQNLYLDTINRKLLDFDFEKVC 77


>SPAC18B11.09c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 207

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 337 TIKNNILLAKNEEVCEENFDIEIKEKDS 420
           TI NN++L  N ++C     ++ K ++S
Sbjct: 116 TIGNNVMLGPNVQLCTATHPLDFKARNS 143


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 319 ENYNLGTIKNNILLAKNEEVCEENFDIEIKEKD 417
           E Y + TI+   LL +     + NFDIE  EKD
Sbjct: 342 EKYGVDTIRY-YLLKRGRLTSDSNFDIEELEKD 373


>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
 Frame = +1

Query: 295 HQLLNIISENYNLGTIKNNIL--LAKN--EEVCEENFDIEIKEKDSIAVIPPLSG 447
           H+++ +++ + N+G+ ++N+L    KN  E    +N++ E     S+ V+PP+ G
Sbjct: 85  HEIVMLLASDGNVGSFESNLLDDCFKNRIEYAKLQNYNFEFVNVSSL-VVPPVWG 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,691,547
Number of Sequences: 5004
Number of extensions: 32694
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)