Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_A09
         (372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270...    28   2.0  
06_01_0651 + 4711369-4712431,4713069-4713763                           27   6.2  
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224     26   8.2  
02_01_0120 + 884467-887649                                             26   8.2  
01_06_1269 + 35883062-35883173,35883331-35883893,35884128-358841...    26   8.2  

>06_03_1067 -
           27326167-27326295,27326572-27326656,27326993-27327033,
           27327274-27327333,27327843-27327962,27328842-27329114,
           27329186-27329257,27329798-27329860,27329957-27330139,
           27330544-27330660,27330734-27332683,27332770-27332907,
           27333003-27333284,27334650-27335522
          Length = 1461

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 15/23 (65%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -2

Query: 347 NQINSKTRNKQL-PTKLLNLLKT 282
           NQ NSK RNK+   TKL NL+KT
Sbjct: 442 NQCNSKKRNKRKGKTKLHNLMKT 464


>06_01_0651 + 4711369-4712431,4713069-4713763
          Length = 585

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 274 GRRHRHASRTLPLGSSASALPTGSFVRSV--RCGHVDACLNTT 152
           G+RHRH +      ++A+A P  + V +V     H D+CL +T
Sbjct: 32  GKRHRHHAVAAKGAAAAAATPGVTDVHAVCRTTPHQDSCLAST 74


>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
          Length = 787

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 192 DRTKLPVGNADADDPSGSV 248
           D+ ++PV NA A D SGSV
Sbjct: 275 DKEEMPVDNATAGDASGSV 293


>02_01_0120 + 884467-887649
          Length = 1060

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 135 IIIGKVVVLRQASTCPHRT-DRTKLPVGNADADDPSGSVRDACR*RLPLV 281
           II+G V++L  A+    R   R +       ADD SGS+  A R  L L+
Sbjct: 698 IIVGTVLLLAVAAVATWRAWSRWQEDNARVAADDESGSLESAARSTLVLL 747


>01_06_1269 +
           35883062-35883173,35883331-35883893,35884128-35884196,
           35884337-35884624
          Length = 343

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 225 ADDPSGSVRDACR*RLPL 278
           ADD  GS+R+ CR R PL
Sbjct: 37  ADDGDGSLREGCRRREPL 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,801,606
Number of Sequences: 37544
Number of extensions: 129061
Number of successful extensions: 277
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)