Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_A09
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-22|CAD36499.1|  655|Caenorhabditis elegans Hypothetical...    29   1.4  
AL034393-21|CAA22320.2|  681|Caenorhabditis elegans Hypothetical...    29   1.4  
AF497833-1|AAM18111.1|  655|Caenorhabditis elegans putative Na-H...    29   1.4  
AF497832-1|AAM18110.1|  681|Caenorhabditis elegans putative Na-H...    29   1.4  
Z81097-8|CAL44976.1|  185|Caenorhabditis elegans Hypothetical pr...    27   4.3  
AL132904-18|CAC35853.1|  457|Caenorhabditis elegans Hypothetical...    27   4.3  
AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical ...    26   9.9  

>AL034393-22|CAD36499.1|  655|Caenorhabditis elegans Hypothetical
           protein Y18D10A.6b protein.
          Length = 655

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 10  VLFLCVLDTLIHITXYNLIKKSFFSIYMPLS*YIIVTNT 126
           V FL +L  +I    YNL K  FFS ++P+  + I   T
Sbjct: 145 VFFLVLLPPIIFENAYNLNKGYFFSNFVPILTFAIFGTT 183


>AL034393-21|CAA22320.2|  681|Caenorhabditis elegans Hypothetical
           protein Y18D10A.6a protein.
          Length = 681

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 10  VLFLCVLDTLIHITXYNLIKKSFFSIYMPLS*YIIVTNT 126
           V FL +L  +I    YNL K  FFS ++P+  + I   T
Sbjct: 171 VFFLVLLPPIIFENAYNLNKGYFFSNFVPILTFAIFGTT 209


>AF497833-1|AAM18111.1|  655|Caenorhabditis elegans putative Na-H
           exchanger isoform 8b protein.
          Length = 655

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 10  VLFLCVLDTLIHITXYNLIKKSFFSIYMPLS*YIIVTNT 126
           V FL +L  +I    YNL K  FFS ++P+  + I   T
Sbjct: 145 VFFLVLLPPIIFENAYNLNKGYFFSNFVPILTFAIFGTT 183


>AF497832-1|AAM18110.1|  681|Caenorhabditis elegans putative Na-H
           exchanger isoform 8a protein.
          Length = 681

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 10  VLFLCVLDTLIHITXYNLIKKSFFSIYMPLS*YIIVTNT 126
           V FL +L  +I    YNL K  FFS ++P+  + I   T
Sbjct: 171 VFFLVLLPPIIFENAYNLNKGYFFSNFVPILTFAIFGTT 209


>Z81097-8|CAL44976.1|  185|Caenorhabditis elegans Hypothetical
           protein K07A1.17 protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 13  LFLCVLDTLIHITXYN---LIKKSFFSIYM 93
           L LC+LDTL+HI        +K   +++Y+
Sbjct: 49  LLLCILDTLVHIASIGGRIFLKPDHYALYI 78


>AL132904-18|CAC35853.1|  457|Caenorhabditis elegans Hypothetical
           protein Y111B2A.24 protein.
          Length = 457

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 265 HRHASRTLPLGSSASALPTGSFVRSV 188
           HR A   LPLG  +  LPT +F RSV
Sbjct: 329 HRGALLDLPLGFVSIPLPTPNFSRSV 354


>AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical
           protein F14D2.6 protein.
          Length = 998

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -3

Query: 250 RTLPLGSSASALPTGSFVRSVRCGHVDACLNTTTLPI 140
           R L L S     P G F   +   H D CL+T+ L +
Sbjct: 269 RRLGLDSLKQLGPAGKFTIHIANNHPDFCLSTSELQV 305


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,143,000
Number of Sequences: 27780
Number of extensions: 124464
Number of successful extensions: 295
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)