Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_A09
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.2  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    20   8.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           20   8.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +3

Query: 78  LFYLHAIKLIYHCYKYQKTIIIGKVVVLRQASTC 179
           +F +   + ++  YK  +  II  V   R  +TC
Sbjct: 285 MFLVVTAQPVHSAYKAPEETIISSVFTTRHNATC 318


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -2

Query: 158 YNYFTNNYCF 129
           YN+F N +C+
Sbjct: 531 YNWFQNTFCY 540


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 166 RRPHVRIVRIARNY 207
           +  HV + R+ RNY
Sbjct: 380 KEKHVEVARLIRNY 393


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 166 RRPHVRIVRIARNY 207
           +  HV + R+ RNY
Sbjct: 380 KEKHVEVARLIRNY 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,963
Number of Sequences: 438
Number of extensions: 1518
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)