Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_A08
         (232 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    24   3.1  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    24   3.1  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    23   5.4  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    23   7.2  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    23   7.2  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    23   7.2  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    22   9.5  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    22   9.5  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    22   9.5  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    22   9.5  

>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 197 MGPPKLMIQSPSRVMYAD 144
           MGP + ++  PSR+ Y D
Sbjct: 443 MGPSRFVLMDPSRMFYWD 460


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 230 VIWDWWNRR 204
           +IWDW NRR
Sbjct: 286 IIWDWQNRR 294


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 189 PKAHDPEPQPRDVRGRMSIGVR 124
           P A  P P P  +RG+   G+R
Sbjct: 178 PAAQPPFPPPFKMRGKRGFGMR 199


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +2

Query: 50  IPMLGRTLMPMPMHKLMERTVQMLTRTPMLMRP 148
           +P +   L+P   H L    + +  R P + RP
Sbjct: 219 LPRIAVPLLPHEYHHLHSLLLDVTLRNPQISRP 251


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 32  EPLSLCIPMLGRTLMPMPMHKLMERTVQMLTRTPM 136
           E  ++ IPM   T M +PM ++   T+ M   T M
Sbjct: 22  EITTMTIPMEEITTMTIPMEEITTMTIPMEEITTM 56


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 24  RSLNPYPYAYQCWGE 68
           R L P  Y  QCWG+
Sbjct: 494 RKLEPPFYLQQCWGK 508


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 228 NLGLVEPKVHDGTPKAH 178
           N+G   P++H+  PK H
Sbjct: 343 NIGHCSPEIHNHFPKQH 359


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 147 RVHHAAGALDHELWGS 194
           RV HA G L+H  W +
Sbjct: 458 RVDHAIGNLNHLFWAA 473


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -3

Query: 224 WDWWNRRCM 198
           W+ WN+RC+
Sbjct: 217 WNGWNKRCL 225


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 14  SSASLFEPLSLCIPMLGRTLMPMPMHKLMERT 109
           S + +F  + LC P   +  +  P  +LME T
Sbjct: 167 SCSRVFNAVQLCSPKKSKDDITTPKKRLMEDT 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 817,186
Number of Sequences: 5004
Number of extensions: 10195
Number of successful extensions: 33
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)